Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2636.7 1379 100.0
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 2581.2 1379 98.0
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2575.8 1377 96.7
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 2561.6 1393 95.4
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 2320.8 1391 87.1
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 2303.9 1390 87.1
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 2280.4 1395 85.8
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 2272.3 1394 85.4
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 2269.6 1394 85.3
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 2245.3 1400 84.7
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 2113.2 1414 80.3
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1904.4 1400 73.3
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1518.8 1353 61.6
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1514.6 1428 57.8
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1510.7 1371 59.4
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1501.5 1371 59.5
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1484.5 1378 60.0
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1484.2 1427 57.2
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1478.0 1350 59.4
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1476.8 1362 59.5
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1474.9 1363 59.8
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1469.9 1369 59.2
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1464.5 1309 60.0
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1449.9 1351 59.2
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1446.8 1364 58.9
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1445.6 1434 55.8
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1435.2 1291 58.6
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1434.9 1375 57.3
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1434.9 1375 57.3
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1433.7 1386 57.6
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1432.9 1420 54.9
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1432.2 1364 58.1
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1430.2 1386 56.9
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1429.1 1358 58.7
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1426.0 1359 58.0
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1426.0 1420 55.4
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1425.6 1370 57.2
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1424.5 1429 56.5
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1424.1 1373 57.0
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1423.7 1286 59.0
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1423.3 1429 56.4
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1422.5 1386 56.9
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1421.0 1429 56.3
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1420.6 1431 56.5
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1418.3 1368 56.7
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1417.9 1417 55.0
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1417.5 1368 57.4
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1416.7 1360 57.7
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1416.4 1367 57.9
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1409.4 1374 56.8
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1408.3 1464 54.6
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1404.8 1419 53.9
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1397.9 1366 56.7
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1382.9 1429 55.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1374.4 1390 54.7
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1371.3 1358 56.0
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1365.9 1380 56.2
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1363.2 1377 56.1
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1348.6 1295 57.4
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1346.3 1292 55.9
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1344.3 1039 64.1
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1343.6 1292 55.8
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1342.0 1269 55.4
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1338.9 1359 54.6
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1332.8 1253 57.1
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1331.6 1376 52.1
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1327.0 1324 53.7
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1326.2 1233 56.7
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1324.7 1320 56.1
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1320.8 1360 52.5
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1317.0 1358 52.3
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1308.1 1274 54.8
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1307.7 1310 53.0
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1303.5 1366 51.6
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1277.3 1285 55.6
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1259.2 1326 51.5
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1255.7 1303 52.9
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1250.3 1437 50.9
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1237.2 1289 51.1
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1235.7 1202 54.6
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1230.3 1029 59.1
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1205.3 1280 52.0
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1191.0 1185 56.1
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1175.2 1394 46.5
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1167.9 1210 54.1
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1144.0 1274 49.9
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1105.9 852 62.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1100.5 1076 58.1
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1100.1 1176 52.7
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1094.0 860 63.8
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.9e-309 1064.3 769 68.3
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 1.0e-308 1063.9 1362 46.5
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 1.1e-302 1043.9 768 66.8
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 2.4e-297 1026.2 1030 52.1
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 2.6e-296 1022.7 862 61.0
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 6.9e-289 998.0 1048 52.2
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 7.9e-285 984.6 1031 51.7
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.0e-247 861.3 1011 47.7
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 1.2e-243 847.8 852 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 7.6e-211 738.8 819 47.5
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 4.9e-210 736.1 480 73.8
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.9e-206 724.2 888 50.8
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.7e-176 624.0 675 53.6
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 3.6e-176 623.6 809 44.0
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.2e-165 587.8 492 62.2
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 8.8e-159 565.8 725 51.6
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 1.7e-157 561.6 725 51.4
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.0e-143 515.8 498 52.0
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 4.7e-136 490.3 324 70.7
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 3.4e-126 457.6 372 59.9
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 6.6e-106 390.2 492 49.2
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.5e-105 388.3 325 57.5
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.0e-94 352.1 235 72.8
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.8e-90 339.0 295 58.3
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.3e-80 306.2 206 72.3
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 9.7e-73 280.0 994 25.8
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.1e-68 266.5 228 61.0
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 3.2e-68 265.0 208 61.1
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.5e-65 255.4 173 67.6
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.1e-63 250.0 564 39.9
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 2.6e-62 245.4 891 24.9
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 4.5e-62 244.6 581 39.9
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 4.2e-60 238.0 721 25.7
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 1.7e-53 216.1 145 68.3
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 5.7e-49 201.1 155 69.0
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.2e-45 189.1 176 60.8
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 2.1e-43 182.6 139 63.3
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 2.8e-40 172.2 104 78.8
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 6.3e-40 171.0 115 69.6
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 2.7e-35 155.6 475 33.7
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 2.3e-34 152.5 138 53.6
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 4.0e-34 151.8 232 39.7
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.2e-33 150.2 425 35.3
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 1.3e-32 146.7 158 54.4
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 1.4e-31 143.3 137 49.6
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 3.1e-31 142.1 689 23.4
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 1.5e-25 123.2 85 65.9
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.7e-24 119.8 115 52.2
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 1.4e-23 116.7 105 56.2
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 1.6e-22 113.2 112 54.5
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 5.9e-22 111.3 123 53.7
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 7.8e-22 110.9 72 65.3
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.1e-20 107.1 79 64.6
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 3.3e-20 105.5 80 60.0
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 7.3e-20 104.4 121 49.6
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 2.1e-19 102.8 119 45.4
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 8.0e-19 100.9 139 44.6
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 2.3e-18 99.4 75 62.7
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 4.0e-18 98.6 112 49.1
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 6.8e-18 97.8 154 41.6
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 6.8e-18 97.8 69 63.8
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.9e-16 92.4 62 69.4
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.1e-12 80.5 113 38.9
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 2.5e-12 79.3 43 67.4
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 2.1e-11 76.3 67 58.2
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 4.7e-11 75.1 104 44.2
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-10 73.9 54 51.9
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-10 73.6 180 36.7
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 6.8e-10 71.2 87 50.6
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 2.6e-09 69.3 36 80.6
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 7.5e-09 67.8 48 68.8
Thhalv10002734m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 2.9e-08 65.9 44 72.7
BolC3t20833H Brassica oleracea HOM05D000471 ORTHO05D000199 2.1e-06 59.7 64 53.1
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 6.0e-06 58.2 73 37.0


User provided reference genes

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