Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1181.0 602 100.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1178.7 602 99.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 0.0e+00 1177.2 602 99.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 0.0e+00 1165.6 602 98.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1159.8 603 97.5
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1129.8 603 95.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 0.0e+00 1081.2 602 91.5
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 0.0e+00 1075.5 605 90.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.7e-303 1045.4 603 87.9
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.2e-301 1039.3 605 87.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 5.5e-299 1030.4 602 87.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.8e-297 1025.4 604 85.9
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.0e-276 956.4 610 81.1
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.4e-254 882.1 614 73.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.6e-245 852.8 607 71.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.3e-236 823.2 615 66.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 3.0e-236 822.0 615 68.0
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.9e-235 819.3 615 66.8
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.9e-235 819.3 613 66.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.9e-235 819.3 613 68.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 4.3e-235 818.1 615 67.6
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.3e-234 816.6 622 65.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.8e-234 815.5 624 66.5
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 8.1e-234 813.9 612 67.0
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.4e-233 813.1 614 67.8
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 4.0e-233 811.6 613 66.1
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.0e-233 811.6 613 65.7
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 5.3e-233 811.2 616 65.4
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.6e-232 808.9 609 66.8
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.4e-232 808.5 613 66.6
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.8e-232 807.7 615 66.7
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 7.6e-232 807.4 620 66.6
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.7e-231 806.2 616 67.0
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.2e-231 805.8 614 67.9
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.2e-231 805.8 614 67.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.9e-231 805.4 614 65.5
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.8e-231 805.1 613 66.4
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.9e-231 804.7 607 66.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.4e-231 804.3 613 65.3
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.4e-231 803.9 616 66.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 4.2e-230 801.6 614 67.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 7.1e-230 800.8 615 65.5
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.2e-229 800.0 615 65.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.6e-229 799.7 617 64.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.7e-229 798.9 613 67.0
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 4.6e-229 798.1 614 66.4
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 7.9e-229 797.3 620 66.0
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.7e-228 796.2 615 65.4
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.3e-228 795.8 617 64.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 6.6e-228 794.3 619 64.6
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.9e-227 792.7 612 65.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.1e-226 789.3 613 66.1
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 3.6e-226 788.5 615 64.6
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.8e-226 788.1 616 65.3
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.4e-224 781.9 613 65.1
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 5.8e-224 781.2 613 65.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.2e-223 779.2 600 65.2
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.2e-223 779.2 625 63.5
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.9e-223 778.9 615 64.6
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.9e-223 778.9 618 64.1
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.2e-222 775.4 612 63.6
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.6e-221 773.1 614 63.8
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 6.0e-221 771.2 614 63.5
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.3e-220 769.2 611 64.0
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.3e-220 769.2 689 58.6
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.3e-220 769.2 595 65.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 3.0e-220 768.8 614 62.5
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 6.7e-220 767.7 612 64.2
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.3e-218 763.5 604 64.2
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 4.8e-218 761.5 609 63.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.5e-216 756.5 606 64.2
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.5e-216 755.0 565 65.1
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.0e-215 753.8 601 63.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.4e-214 750.0 571 66.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.0e-212 743.8 742 55.3
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.1e-211 740.3 602 63.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.7e-210 735.3 612 61.3
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.9e-209 731.1 612 60.9
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.0e-208 729.6 609 62.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.2e-206 722.2 573 62.8
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.6e-205 719.9 609 61.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 6.7e-204 714.5 606 60.1
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 8.7e-204 714.1 574 65.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.3e-203 712.2 549 64.8
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 4.3e-203 711.8 548 65.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 4.8e-202 708.4 592 61.7
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.1e-190 670.6 611 57.9
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 8.5e-183 644.4 615 55.1
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.0e-180 635.6 505 63.8
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.0e-176 623.2 615 53.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 3.2e-174 615.9 609 56.2
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.5e-168 595.9 678 47.9
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 7.0e-161 571.6 527 56.4
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.4e-155 552.4 685 47.9
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.9e-146 522.3 488 57.4
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.3e-143 514.2 504 54.2
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.7e-138 497.3 389 64.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 7.8e-136 488.4 370 64.3
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 9.5e-134 481.5 360 65.3
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 8.4e-122 441.8 360 64.4
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 5.4e-121 439.1 430 56.7
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 5.4e-113 412.5 365 59.7
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.3e-103 381.3 321 61.1
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 5.1e-103 379.4 645 38.1
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-102 378.3 377 54.1
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.0e-99 367.5 258 68.6
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.7e-98 364.4 258 69.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.3e-93 348.2 245 69.0
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.1e-92 343.2 257 66.1
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.4e-83 313.5 232 66.4
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 5.5e-81 306.2 634 34.2
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 5.5e-73 279.6 179 72.6
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-55 221.9 218 54.1
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-54 218.4 232 52.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-45 188.0 178 55.1
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 2.7e-43 181.0 159 57.2
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-41 174.5 104 80.8
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.3e-41 174.1 112 73.2
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 7.3e-41 172.9 109 76.1
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-39 167.2 112 70.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 9.8e-38 162.5 111 68.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-37 161.8 112 68.8
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.4e-36 157.9 81 93.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.4e-36 157.9 81 93.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.0e-35 154.8 104 69.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 5.8e-30 136.7 128 58.6
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-28 132.5 128 53.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-28 130.6 100 63.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.6e-27 128.6 82 75.6
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-27 127.9 87 71.3
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 9.5e-25 119.4 509 24.8
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-24 119.0 72 79.2
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-24 116.3 114 53.5
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-22 109.4 68 72.1
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 4.1e-20 104.0 150 42.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-19 100.9 66 72.7
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-18 99.4 55 78.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.2e-16 90.1 83 51.8
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.9e-13 81.3 146 38.4
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 4.9e-13 80.5 55 72.7
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 4.6e-11 73.9 182 28.6
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-11 73.6 41 75.6
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 6.0e-11 73.6 182 28.0
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 7.8e-11 73.2 182 28.6
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-09 67.8 40 72.5
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.2e-08 65.9 41 68.3
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.1e-08 65.1 202 25.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.1e-08 65.1 185 27.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.8e-08 64.7 41 68.3
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.6e-08 64.3 47 61.7
BolC5t30574H Brassica oleracea HOM05D002136 ORTHO05D005956 4.7e-08 63.9 38 78.9
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.1e-07 62.8 183 23.5


User provided reference genes

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