Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p42140 Brassica napus HOM05D000393 ORTHO05D000275 6.9e-47 190.3 95 100.0
BcaC08g46540 Brassica carinata HOM05D000393 ORTHO05D000275 1.9e-36 155.6 90 85.6
C06p45030 Brassica napus HOM05D000393 ORTHO05D000275 1.9e-36 155.6 90 85.6
BolC6t39561H Brassica oleracea HOM05D000393 ORTHO05D000275 1.9e-36 155.6 90 85.6
A07p37350 Brassica napus HOM05D000393 ORTHO05D000275 4.2e-36 154.5 90 84.4
BraA07t31293Z Brassica rapa HOM05D000393 ORTHO05D000275 9.4e-36 153.3 90 84.4
Sp5g26090 Schrenkiella parvula HOM05D000393 ORTHO05D000275 2.7e-35 151.8 90 85.6
Thhalv10019141m.g Eutrema salsugineum HOM05D000393 ORTHO05D000275 2.0e-33 145.6 90 82.2
BcaB03g14854 Brassica carinata HOM05D000393 ORTHO05D000275 7.4e-33 143.7 90 82.2
BcaC08g45796 Brassica carinata HOM05D000393 ORTHO05D000275 8.2e-32 140.2 90 77.8
AL2G30450 Arabidopsis lyrata HOM05D000393 ORTHO05D000275 1.4e-31 139.4 90 78.9
BcaB03g15587 Brassica carinata HOM05D000393 ORTHO05D000275 7.7e-30 133.7 90 74.4
C06p35850 Brassica napus HOM05D000393 ORTHO05D000275 2.2e-29 132.1 90 73.3
BolC6t38708H Brassica oleracea HOM05D000393 ORTHO05D000275 2.2e-29 132.1 90 73.3
BcaC03g15250 Brassica carinata HOM05D000393 ORTHO05D000275 2.5e-28 128.6 91 73.6
C02p28410 Brassica napus HOM05D000393 ORTHO05D000275 7.2e-28 127.1 91 72.5
BolC2t08884H Brassica oleracea HOM05D000393 ORTHO05D000275 7.2e-28 127.1 91 72.5
A02p17070 Brassica napus HOM05D000393 ORTHO05D000275 9.4e-28 126.7 90 73.3
BraA02t06752Z Brassica rapa HOM05D000393 ORTHO05D000275 9.4e-28 126.7 90 73.3
CARHR064190 Cardamine hirsuta HOM05D000393 ORTHO05D000275 1.6e-27 125.9 91 75.8
Carub.0002s1771 Capsella rubella HOM05D000393 ORTHO05D000275 6.3e-24 114.0 90 67.8
AT1G70920 Arabidopsis thaliana HOM05D000393 ORTHO05D000275 2.3e-18 95.5 58 77.6
Thecc.02G282000 Theobroma cacao HOM05D000393 ORTHO05D000275 1.8e-15 85.9 91 57.1
Sabra08G0098200 Salix brachista HOM05D000393 ORTHO05D000275 2.4e-15 85.5 88 56.8
Hma1.2p1_0096F.1_g047860 Hydrangea macrophylla HOM05D000393 ORTHO05D000275 4.5e-14 81.3 82 54.9
Duzib248G0999 Durio zibethinus HOM05D000393 ORTHO05D000275 1.0e-13 80.1 90 54.4
Duzib251G0899 Durio zibethinus HOM05D000393 ORTHO05D000275 1.0e-13 80.1 91 54.9
Manes.15G127800 Manihot esculenta HOM05D000393 ORTHO05D000275 1.0e-13 80.1 90 57.8
Duzib268G0589 Durio zibethinus HOM05D000393 ORTHO05D000275 1.7e-13 79.3 91 57.1
Dinv05176 Davidia involucrata HOM05D000393 ORTHO05D000275 2.3e-13 79.0 91 54.9
Potri.008G129500 Populus trichocarpa HOM05D000393 ORTHO05D000275 2.9e-13 78.6 88 55.7
Gohir.1Z049559 Gossypium hirsutum HOM05D000393 ORTHO05D000275 6.5e-13 77.4 92 55.4
Gohir.1Z076300 Gossypium hirsutum HOM05D000393 ORTHO05D000275 6.5e-13 77.4 92 55.4
Manes.17G077200 Manihot esculenta HOM05D000393 ORTHO05D000275 6.5e-13 77.4 91 60.4
Gohir.D01G145000 Gossypium hirsutum HOM05D000393 ORTHO05D000275 3.2e-12 75.1 92 54.3
Gorai.002G178800 Gossypium raimondii HOM05D000393 ORTHO05D000275 3.2e-12 75.1 92 54.3
MD13G1025200 Malus domestica HOM05D000393 ORTHO05D000275 7.2e-12 73.9 91 53.8
MD16G1027800 Malus domestica HOM05D000393 ORTHO05D000275 9.5e-12 73.6 88 54.5
Potri.010G112600 Populus trichocarpa HOM05D000393 ORTHO05D000275 1.2e-11 73.2 88 52.3
Sabra10G0082700 Salix brachista HOM05D000393 ORTHO05D000275 2.1e-11 72.4 99 50.5
TWI31G0973 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 2.1e-11 72.4 83 53.0
GSVIVG01011754001 Vitis vinifera HOM05D000393 ORTHO05D000275 2.1e-11 72.4 85 57.6
Nitab4.5_0000742g0180 Nicotiana tabacum HOM05D000393 ORTHO05D000275 2.8e-11 72.0 93 52.7
arahy.Tifrunner.gnm1.ann1.F1GXSN Arachis hypogaea HOM05D000393 ORTHO05D000275 1.4e-10 69.7 89 53.9
arahy.Tifrunner.gnm1.ann1.RVD233 Arachis hypogaea HOM05D000393 ORTHO05D000275 1.4e-10 69.7 89 53.9
FAN22G0839 Fragaria x ananassa HOM05D000393 ORTHO05D000275 2.3e-10 68.9 82 53.7
CiPaw.06G011500 Carya illinoinensis HOM05D000393 ORTHO05D000275 3.0e-10 68.6 84 51.2
TWI79G1351 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 4.0e-10 68.2 86 50.0
CiPaw.05G250100 Carya illinoinensis HOM05D000393 ORTHO05D000275 6.8e-10 67.4 93 49.5
Eucgr.G02186 Eucalyptus grandis HOM05D000393 ORTHO05D000275 8.8e-10 67.0 82 52.4
Glyma.07G218000 Glycine max HOM05D000393 ORTHO05D000275 1.2e-09 66.6 89 51.7
Glyma.20G014400 Glycine max HOM05D000393 ORTHO05D000275 2.0e-09 65.9 89 51.7
Actinidia14974 Actinidia chinensis HOM05D000393 ORTHO05D000275 3.4e-09 65.1 91 46.2
Lalb_Chr05g0219491 Lupinus albus HOM05D000393 ORTHO05D000275 3.4e-09 65.1 88 47.7
Phvul.002G094100 Phaseolus vulgaris HOM05D000393 ORTHO05D000275 3.4e-09 65.1 89 50.6
Cfa008613 Carpinus fangiana HOM05D000393 ORTHO05D000275 4.4e-09 64.7 88 51.1
TAR629G2451 Trochodendron aralioides HOM05D000393 ORTHO05D000275 5.7e-09 64.3 92 48.9
THA.LOC104823009 Tarenaya hassleriana HOM05D000393 ORTHO05D000275 9.8e-09 63.5 88 50.0
Haze_11002 Corylus avellana HOM05D000393 ORTHO05D000275 1.7e-08 62.8 88 50.0
Medtr4g084750 Medicago truncatula HOM05D000393 ORTHO05D000275 2.8e-08 62.0 93 48.4
PGR119G2518 Punica granatum HOM05D000393 ORTHO05D000275 2.8e-08 62.0 91 46.2
TWI75G1359 Tripterygium wilfordii HOM05D000393 ORTHO05D000275 3.7e-08 61.6 89 46.1
QL01p001661 Quercus lobata HOM05D000393 ORTHO05D000275 4.9e-08 61.2 89 49.4
BraA09t37939Z Brassica rapa HOM05D000393 ORTHO05D000275 8.3e-08 60.5 88 46.6
TPR.G38325 Trifolium pratense HOM05D000393 ORTHO05D000275 1.4e-07 59.7 89 48.3
Actinidia36665 Actinidia chinensis HOM05D000393 ORTHO05D000275 2.4e-07 58.9 96 47.9
Sp2g12870 Schrenkiella parvula HOM05D000393 ORTHO05D000275 3.1e-07 58.5 90 44.4
Sed0022666 Sechium edule HOM05D000393 ORTHO05D000275 4.1e-07 58.2 92 47.8
Dinv07650 Davidia involucrata HOM05D000393 ORTHO05D000275 5.4e-07 57.8 91 47.3
THA.LOC104805064 Tarenaya hassleriana HOM05D000393 ORTHO05D000275 5.4e-07 57.8 96 46.9
BcaB07g30399 Brassica carinata HOM05D000393 ORTHO05D000275 7.0e-07 57.4 92 45.7
Sed0007127 Sechium edule HOM05D000393 ORTHO05D000275 7.0e-07 57.4 88 48.9
MSTRG.13592 Avicennia marina HOM05D000393 ORTHO05D000275 9.2e-07 57.0 85 45.9
A02p31960 Brassica napus HOM05D000393 ORTHO05D000275 9.2e-07 57.0 92 44.6
BraA02t08207Z Brassica rapa HOM05D000393 ORTHO05D000275 9.2e-07 57.0 92 44.6
PSO478G4069 Papaver somniferum HOM05D000393 ORTHO05D000275 9.2e-07 57.0 116 37.9
BcaC03g17038 Brassica carinata HOM05D000393 ORTHO05D000275 1.6e-06 56.2 92 44.6
C02p49480 Brassica napus HOM05D000393 ORTHO05D000275 1.6e-06 56.2 92 44.6
BolC2t11033H Brassica oleracea HOM05D000393 ORTHO05D000275 1.6e-06 56.2 92 44.6
Ciclev10016477m.g Citrus clementina HOM05D000393 ORTHO05D000275 1.6e-06 56.2 105 41.0
CsaV3_5G015440 Cucumis sativus L. HOM05D000393 ORTHO05D000275 1.6e-06 56.2 89 46.1
Atru.chr11.558 Acer truncatum HOM05D000393 ORTHO05D000275 2.0e-06 55.8 91 46.2
BcaC06g34178 Brassica carinata HOM05D000393 ORTHO05D000275 2.0e-06 55.8 92 44.6
C07p31860 Brassica napus HOM05D000393 ORTHO05D000275 2.0e-06 55.8 92 44.6
BolC7t43731H Brassica oleracea HOM05D000393 ORTHO05D000275 2.0e-06 55.8 92 44.6
Solyc05g008050.3 Solanum lycopersicum HOM05D000393 ORTHO05D000275 2.0e-06 55.8 99 45.5
Migut.E00430 Erythranthe guttata HOM05D000393 ORTHO05D000275 2.7e-06 55.5 89 43.8
FvH4_4g32460 Fragaria vesca HOM05D000393 ORTHO05D000275 2.7e-06 55.5 82 47.6
FAN12G4082 Fragaria x ananassa HOM05D000393 ORTHO05D000275 2.7e-06 55.5 82 47.6
Nn3g18228 Nelumbo nucifera HOM05D000393 ORTHO05D000275 2.7e-06 55.5 86 44.2
Prupe.1G325000 Prunus persica HOM05D000393 ORTHO05D000275 2.7e-06 55.5 89 44.9
Rhsim09G0097500 Rhododendron simsii HOM05D000393 ORTHO05D000275 2.7e-06 55.5 92 43.5
AL5G10410 Arabidopsis lyrata HOM05D000393 ORTHO05D000275 3.5e-06 55.1 94 44.7
SGA_v2.0_scaffold257G45679 Striga asiatica HOM05D000393 ORTHO05D000275 3.5e-06 55.1 87 40.2
A06p44450 Brassica napus HOM05D000393 ORTHO05D000275 4.5e-06 54.7 92 45.7
A09p23370 Brassica napus HOM05D000393 ORTHO05D000275 4.5e-06 54.7 87 43.7
ClCG01G006050 Citrullus lanatus HOM05D000393 ORTHO05D000275 4.5e-06 54.7 91 40.7
Thhalv10001113m.g Eutrema salsugineum HOM05D000393 ORTHO05D000275 4.5e-06 54.7 90 44.4
Os01g0643600 Oryza sativa ssp. japonica HOM05D000393 ORTHO05D000275 4.5e-06 54.7 93 40.9
Psat7g119960 Pisum sativum HOM05D000393 ORTHO05D000275 4.5e-06 54.7 93 44.1
RcHm_v2.0_Chr4g0441321 Rosa chinensis HOM05D000393 ORTHO05D000275 4.5e-06 54.7 81 48.1
Oeu022830.1 Olea europaea HOM05D000393 ORTHO05D000275 5.9e-06 54.3 90 45.6
TAR371G0267 Trochodendron aralioides HOM05D000393 ORTHO05D000275 5.9e-06 54.3 89 47.2
BcaB07g30745 Brassica carinata HOM05D000393 ORTHO05D000275 7.8e-06 53.9 83 44.6
Carub.0005s0039 Capsella rubella HOM05D000393 ORTHO05D000275 7.8e-06 53.9 90 43.3
PSO017G2998 Papaver somniferum HOM05D000393 ORTHO05D000275 7.8e-06 53.9 117 36.8


User provided reference genes

Program Settings