Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1747.3 858 100.0
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1712.2 859 97.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1711.8 858 97.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1706.4 860 97.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1619.0 862 92.1
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1567.7 862 90.7
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1560.8 863 88.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1558.1 862 87.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1558.1 893 86.2
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1539.2 893 84.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1453.7 880 81.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1349.3 859 76.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 775 76.9
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1254.2 776 77.6
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 781 76.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1234.6 784 74.9
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1230.7 785 75.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1219.9 782 74.6
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 777 74.4
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1211.8 821 71.6
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1204.9 787 73.6
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1196.4 781 73.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1194.1 859 66.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 858 66.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 855 65.8
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 855 65.8
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1181.4 854 66.7
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1180.6 855 65.5
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 859 65.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 857 65.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1169.5 856 66.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1165.2 855 64.2
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 858 65.0
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 855 64.1
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 787 71.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1160.6 861 64.1
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1160.6 860 65.1
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 856 65.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 857 66.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 859 64.7
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 858 65.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1156.4 858 64.8
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 855 64.3
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1148.7 736 74.7
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1147.5 855 64.8
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1146.3 857 64.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 856 64.3
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1143.3 857 63.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1142.5 813 66.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1135.2 868 63.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1133.2 856 63.0
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1132.5 857 63.5
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 856 64.5
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 876 62.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 857 63.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 817 65.0
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1122.1 885 61.5
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1121.7 818 66.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 859 62.2
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 978 57.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 892 61.9
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 859 62.6
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 856 63.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 858 62.6
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1116.7 859 61.9
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1112.4 792 67.9
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1111.7 857 63.4
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 856 62.6
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 857 62.3
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1109.7 816 65.4
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1107.8 807 67.4
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1106.3 858 61.9
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1105.1 829 63.8
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 860 62.3
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1102.0 859 61.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1099.0 881 61.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1099.0 861 61.1
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1098.6 857 61.3
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1097.0 858 61.5
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1094.0 810 64.8
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1090.1 812 63.4
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 827 62.0
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 819 63.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 859 60.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1080.9 856 61.7
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 864 61.7
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1079.3 864 60.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1079.3 859 60.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1078.9 862 60.4
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1077.8 856 61.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1077.8 859 60.7
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 5.9e-312 1074.3 859 60.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.2e-311 1073.2 862 60.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 2.9e-309 1065.1 858 59.9
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 3.2e-308 1061.6 858 59.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 9.6e-305 1050.0 804 62.2
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 2.8e-304 1048.5 856 59.8
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.8e-303 1045.8 874 59.8
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.4e-300 1036.2 819 60.4
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 4.2e-300 1034.6 863 60.0
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.6e-299 1032.7 855 59.2
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 2.3e-298 1028.9 860 58.6
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.3e-297 1025.0 731 67.2
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 9.6e-297 1023.5 863 57.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 3.8e-293 1011.5 756 62.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 8.7e-290 1000.3 722 66.6
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.1e-289 1000.0 812 58.0
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.5e-289 999.6 847 58.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.6e-288 996.1 780 59.7
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.7e-285 986.1 886 55.9
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.7e-285 986.1 852 56.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 2.9e-285 985.3 772 62.6
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 3.2e-284 981.9 782 59.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.2e-283 979.9 776 63.4
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.9e-281 972.6 802 57.6
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 4.3e-281 971.5 858 55.6
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 2.2e-277 959.1 920 52.9
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.0e-266 923.7 481 91.1
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 3.3e-265 918.7 801 58.7
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.5e-254 881.7 823 54.2
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 4.0e-250 868.6 866 50.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.3e-242 842.8 802 51.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.5e-237 824.7 659 61.6
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.8e-234 816.6 793 54.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.5e-228 797.0 838 46.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 2.8e-219 766.1 795 46.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.0e-217 760.0 630 59.5
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.1e-211 740.0 605 60.3
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 6.2e-203 711.8 671 56.3
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.7e-197 693.7 668 50.7
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.5e-196 690.6 665 54.6
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 6.2e-195 685.3 434 72.8
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.4e-183 646.7 430 68.1
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 9.3e-175 618.2 580 56.4
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.7e-171 606.3 594 52.9
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 4.2e-167 592.8 427 65.1
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.2e-161 574.7 920 37.4
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 5.0e-160 569.3 479 57.8
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 5.5e-159 565.8 509 53.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.6e-126 458.0 321 65.4
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.7e-126 457.2 436 54.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.6e-116 424.1 270 73.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 4.9e-115 419.9 408 53.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 4.1e-114 416.8 783 35.4
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.0e-109 400.2 337 58.5
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 4.6e-105 386.7 907 32.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 9.5e-95 352.4 407 47.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 3.7e-91 340.5 402 45.8
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.8e-86 324.3 243 62.6
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.6e-84 317.8 402 46.8
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.1e-82 310.5 530 34.7
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 5.8e-68 263.5 202 60.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 4.8e-54 217.2 208 54.8
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.5e-50 204.9 137 68.6
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 8.7e-48 196.4 167 56.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.3e-46 192.6 100 82.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.8e-40 169.9 99 78.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 5.3e-37 160.6 194 44.8
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 4.5e-28 131.0 87 74.7
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.3e-27 129.4 81 71.6
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 9.4e-26 123.2 155 41.9
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 5.7e-23 114.0 70 77.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 7.4e-23 113.6 98 64.3
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-22 111.3 97 63.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 9.1e-21 106.7 125 48.0
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 5.0e-19 100.9 83 56.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.1e-18 99.8 95 55.8
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 8.8e-16 90.1 82 57.3
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.6e-15 88.6 60 68.3
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.1e-13 83.2 97 48.5
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 9.1e-13 80.1 62 56.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-12 79.7 39 87.2
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.0e-12 79.0 88 43.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.0e-11 74.3 44 75.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 8.8e-08 63.5 57 49.1
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.7e-06 58.2 67 44.8


User provided reference genes

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