Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p33930 Brassica napus HOM05D010848 ORTHO05D024476 1.2e-121 439.9 221 100.0
BcaC01g01669 Brassica carinata HOM05D010848 ORTHO05D024476 1.0e-93 347.1 178 96.6
BolC2t09132H Brassica oleracea HOM05D010848 ORTHO05D000427 4.2e-87 325.1 163 98.2
C09p45800 Brassica napus HOM05D010848 ORTHO05D024476 4.2e-79 298.5 154 95.5
BolC1t05606H Brassica oleracea HOM05D010848 ORTHO05D024476 5.5e-79 298.1 155 96.1
BolC6t38506H Brassica oleracea HOM05D010848 ORTHO05D024476 1.2e-65 253.8 130 97.7
BcaC09g48750 Brassica carinata HOM05D010848 ORTHO05D093948 1.1e-18 97.8 76 68.4
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 1.0e-16 91.3 172 41.3
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 1.0e-16 91.3 172 41.3
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 1.3e-16 90.9 172 40.1
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 5.6e-15 85.5 104 52.9
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 5.6e-15 85.5 104 52.9
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 5.6e-15 85.5 104 52.9
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 1.4e-13 80.9 172 37.2
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 1.5e-12 77.4 165 37.0
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 2.0e-12 77.0 97 51.5
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 2.6e-12 76.6 106 44.3
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 3.4e-12 76.3 97 50.5
CARHR218340 Cardamine hirsuta HOM05D001780 ORTHO05D004373 3.4e-12 76.3 125 43.2
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 3.4e-12 76.3 104 48.1
Cpa.g.sc32.3 Carica papaya HOM05D001780 ORTHO05D004373 7.6e-12 75.1 104 46.2
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 2.2e-11 73.6 105 44.8
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 2.2e-11 73.6 105 44.8
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 2.2e-11 73.6 106 43.4
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 2.9e-11 73.2 106 43.4
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 2.9e-11 73.2 106 43.4
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 2.9e-11 73.2 95 50.5
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 4.9e-11 72.4 103 44.7
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 4.9e-11 72.4 98 46.9
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 4.9e-11 72.4 103 44.7
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 6.4e-11 72.0 166 34.9
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 8.4e-11 71.6 105 44.8
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 8.4e-11 71.6 165 35.8
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 1.1e-10 71.2 103 43.7
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 1.1e-10 71.2 99 45.5
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 1.4e-10 70.9 104 42.3
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 1.4e-10 70.9 104 43.3
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 1.4e-10 70.9 100 46.0
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 1.9e-10 70.5 106 44.3
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 1.9e-10 70.5 104 44.2
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 2.4e-10 70.1 98 45.9
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 2.4e-10 70.1 99 45.5
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 3.2e-10 69.7 220 29.5
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.2e-10 69.7 99 45.5
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 4.1e-10 69.3 97 46.4
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 4.1e-10 69.3 218 29.8
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 4.1e-10 69.3 103 43.7
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 5.4e-10 68.9 104 43.3
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 5.4e-10 68.9 104 44.2
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 5.4e-10 68.9 104 44.2
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 5.4e-10 68.9 105 41.9
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 5.4e-10 68.9 103 43.7
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 5.4e-10 68.9 97 46.4
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 7.1e-10 68.6 110 42.7
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 7.1e-10 68.6 106 41.5
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 7.1e-10 68.6 106 41.5
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 7.1e-10 68.6 106 41.5
FAN17G1275 Fragaria x ananassa HOM05D001780 ORTHO05D004373 7.1e-10 68.6 106 41.5
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 9.2e-10 68.2 104 43.3
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 9.2e-10 68.2 104 43.3
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 1.2e-09 67.8 99 42.4
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 1.2e-09 67.8 104 43.3
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 1.6e-09 67.4 99 42.4
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 1.6e-09 67.4 104 43.3
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 1.6e-09 67.4 103 42.7
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 1.6e-09 67.4 173 33.5
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 1.6e-09 67.4 102 42.2
C07p51740 Brassica napus HOM05D001780 ORTHO05D004373 2.1e-09 67.0 111 45.0
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 2.1e-09 67.0 97 46.4
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 2.7e-09 66.6 112 40.2
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 2.7e-09 66.6 97 45.4
FAN17G1933 Fragaria x ananassa HOM05D001780 ORTHO05D004373 3.5e-09 66.2 106 40.6
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 3.5e-09 66.2 106 40.6
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 3.5e-09 66.2 96 44.8
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 4.6e-09 65.9 97 45.4
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 4.6e-09 65.9 99 43.4
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 4.6e-09 65.9 102 39.2
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 6.0e-09 65.5 103 41.7
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 6.0e-09 65.5 103 41.7
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 6.0e-09 65.5 97 44.3
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 6.0e-09 65.5 97 41.2
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 6.0e-09 65.5 103 41.7
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 7.8e-09 65.1 106 43.4
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 7.8e-09 65.1 111 37.8
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 1.0e-08 64.7 97 43.3
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 1.0e-08 64.7 106 40.6
Potri.007G126501 Populus trichocarpa HOM05D001780 ORTHO05D004373 1.0e-08 64.7 103 42.7
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 1.0e-08 64.7 99 42.4
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 1.3e-08 64.3 105 44.8
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 1.3e-08 64.3 98 44.9
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 1.3e-08 64.3 106 40.6
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 1.3e-08 64.3 99 42.4
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.7e-08 63.9 102 43.1
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 1.7e-08 63.9 102 42.2
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 1.7e-08 63.9 99 43.4
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 2.3e-08 63.5 98 44.9
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 2.3e-08 63.5 104 42.3
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 3.0e-08 63.2 99 41.4
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.0e-08 63.2 95 41.1
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 3.0e-08 63.2 103 40.8
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 3.0e-08 63.2 103 41.7
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 3.0e-08 63.2 99 42.4
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 3.9e-08 62.8 105 41.9
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 5.1e-08 62.4 106 39.6
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 5.1e-08 62.4 95 43.2
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 6.6e-08 62.0 98 44.9
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 8.6e-08 61.6 105 42.9
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 8.6e-08 61.6 98 44.9
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 8.6e-08 61.6 106 36.8
RcHm_v2.0_Chr5g0060201 Rosa chinensis HOM05D001780 ORTHO05D004373 8.6e-08 61.6 97 41.2
SHI29174 Sapria himalayana HOM05D001780 ORTHO05D004373 8.6e-08 61.6 106 40.6
arahy.Tifrunner.gnm1.ann1.NNH8AZ Arachis hypogaea HOM05D001780 ORTHO05D004373 1.1e-07 61.2 96 42.7
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 1.5e-07 60.8 125 32.8
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 1.5e-07 60.8 104 37.5
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 1.5e-07 60.8 104 37.5
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 1.9e-07 60.5 134 31.3
Dinv33218 Davidia involucrata HOM05D001780 ORTHO05D004373 4.3e-07 59.3 98 38.8
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 7.3e-07 58.5 105 41.0
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 9.6e-07 58.2 95 37.9
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 9.6e-07 58.2 95 36.8
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 9.6e-07 58.2 94 41.5
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 9.6e-07 58.2 97 39.2
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 1.2e-06 57.8 113 38.1
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 1.2e-06 57.8 113 38.9
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 1.6e-06 57.4 100 37.0
Rhsim05G0075700 Rhododendron simsii HOM05D001780 ORTHO05D004373 2.8e-06 56.6 146 35.6
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 3.6e-06 56.2 130 39.2
ECA234G4143 Erigeron canadensis HOM05D001780 ORTHO05D004373 8.1e-06 55.1 98 39.8


User provided reference genes

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