Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p33780 Brassica napus HOM05D000762 ORTHO05D002234 9.2e-62 240.0 114 100.0
Sp5g29070 Schrenkiella parvula HOM05D000762 ORTHO05D002234 3.2e-22 108.6 53 88.7
AL2G33700 Arabidopsis lyrata HOM05D000762 ORTHO05D002234 2.7e-21 105.5 53 84.9
AT1G73875 Arabidopsis thaliana HOM05D000762 ORTHO05D002234 2.7e-21 105.5 75 65.3
Carub.0002s2064 Capsella rubella HOM05D000762 ORTHO05D002234 2.7e-21 105.5 75 64.0
Thhalv10018567m.g Eutrema salsugineum HOM05D000762 ORTHO05D002234 1.3e-20 103.2 53 81.1
CARHR066980 Cardamine hirsuta HOM05D000762 ORTHO05D002234 3.9e-20 101.7 53 81.1
C06p48020 Brassica napus HOM05D000762 ORTHO05D002234 1.5e-19 99.8 73 65.8
BolC6t39837H Brassica oleracea HOM05D000762 ORTHO05D002234 1.5e-19 99.8 73 65.8
A07p39730 Brassica napus HOM05D000762 ORTHO05D002234 3.3e-19 98.6 60 76.7
THA.LOC104798740 Tarenaya hassleriana HOM05D000762 ORTHO05D002234 7.3e-19 97.4 53 79.2
BraA07t31522Z Brassica rapa HOM05D000762 ORTHO05D002234 1.4e-17 93.2 74 62.2
Atru.chr9.834 Acer truncatum HOM05D000762 ORTHO05D002234 1.4e-14 83.2 54 64.8
CSS0019648 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D002234 2.4e-14 82.4 54 59.3
CSS0024439 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D002234 2.4e-14 82.4 54 59.3
Cfa019783 Carpinus fangiana HOM05D000762 ORTHO05D002234 4.2e-14 81.6 52 63.5
Dinv28095 Davidia involucrata HOM05D000762 ORTHO05D002234 1.6e-13 79.7 52 63.5
TWI81G0888 Tripterygium wilfordii HOM05D000762 ORTHO05D002234 2.1e-13 79.3 54 61.1
Actinidia39828 Actinidia chinensis HOM05D000762 ORTHO05D002234 2.7e-13 79.0 53 62.3
Ca_25496_v3 Cicer arietinum L. HOM05D000762 ORTHO05D002234 2.7e-13 79.0 92 43.5
Haze_18666 Corylus avellana HOM05D000762 ORTHO05D002234 2.7e-13 79.0 52 61.5
Haze_18668 Corylus avellana HOM05D000762 ORTHO05D002234 3.5e-13 78.6 52 61.5
MD06G1215600 Malus domestica HOM05D000762 ORTHO05D002234 4.6e-13 78.2 70 50.0
Prupe.5G220800 Prunus persica HOM05D000762 ORTHO05D002234 4.6e-13 78.2 83 45.8
QL10p025208 Quercus lobata HOM05D000762 ORTHO05D002234 4.6e-13 78.2 101 38.6
Solyc03g119570.3 Solanum lycopersicum HOM05D000762 ORTHO05D002234 4.6e-13 78.2 53 58.5
PGSC0003DMG400005718 Solanum tuberosum HOM05D000762 ORTHO05D002234 4.6e-13 78.2 53 58.5
Potri.012G057100 Populus trichocarpa HOM05D000762 ORTHO05D002234 6.0e-13 77.8 52 63.5
Thecc.03G034400 Theobroma cacao HOM05D000762 ORTHO05D002234 6.0e-13 77.8 53 60.4
Medtr6g084560 Medicago truncatula HOM05D000762 ORTHO05D002234 7.9e-13 77.4 92 42.4
GSVIVG01008277001 Vitis vinifera HOM05D000762 ORTHO05D002234 7.9e-13 77.4 85 44.7
Duzib068G0056 Durio zibethinus HOM05D000762 ORTHO05D002234 1.0e-12 77.0 53 56.6
Gohir.A12G266400 Gossypium hirsutum HOM05D000762 ORTHO05D002234 1.3e-12 76.6 53 58.5
Gohir.D12G266800 Gossypium hirsutum HOM05D000762 ORTHO05D002234 1.3e-12 76.6 53 58.5
Sopen03g038400 Solanum pennellii HOM05D000762 ORTHO05D002234 1.3e-12 76.6 53 56.6
Aa31LG4G4190 Aethionema arabicum HOM05D000090 ORTHO05D001322 1.8e-12 76.3 72 48.6
Gorai.008G286800 Gossypium raimondii HOM05D000762 ORTHO05D002234 1.8e-12 76.3 53 58.5
Lj2g0022064 Lotus japonicus HOM05D000762 ORTHO05D002234 2.3e-12 75.9 54 59.3
Ciclev10020074m.g Citrus clementina HOM05D000762 ORTHO05D002234 3.0e-12 75.5 52 63.5
Glyma.09G184700 Glycine max HOM05D000762 ORTHO05D002234 3.0e-12 75.5 54 59.3
CANSAT80G0130 Cannabis sativa HOM05D000762 ORTHO05D002234 3.9e-12 75.1 53 56.6
Lsat_1_v5_gn_4_99121 Lactuca sativa HOM05D000762 ORTHO05D002234 3.9e-12 75.1 122 34.4
Migut.I00344 Erythranthe guttata HOM05D000762 ORTHO05D002234 8.7e-12 73.9 58 50.0
Sabra12G0042500 Salix brachista HOM05D000762 ORTHO05D002234 8.7e-12 73.9 52 59.6
VMungo0464G0574 Vigna mungo HOM05D000762 ORTHO05D002234 8.7e-12 73.9 92 39.1
Manes.01G012100 Manihot esculenta HOM05D000762 ORTHO05D002234 1.1e-11 73.6 54 57.4
Phvul.004G157500 Phaseolus vulgaris HOM05D000762 ORTHO05D002234 1.1e-11 73.6 92 40.2
arahy.Tifrunner.gnm1.ann1.395KN8 Arachis hypogaea HOM05D000762 ORTHO05D002234 1.5e-11 73.2 104 37.5
arahy.Tifrunner.gnm1.ann1.I4V6WJ Arachis hypogaea HOM05D000762 ORTHO05D002234 1.5e-11 73.2 104 37.5
Psat1g037760 Pisum sativum HOM05D000762 ORTHO05D002234 1.5e-11 73.2 92 41.3
vmacro17662 Vaccinium macrocarpon HOM05D000762 ORTHO05D002234 1.5e-11 73.2 60 53.3
HPP92_004824 Vanilla planifolia HOM05D000762 ORTHO05D002234 1.5e-11 73.2 55 52.7
FvH4_5g12230 Fragaria vesca HOM05D000762 ORTHO05D002234 1.9e-11 72.8 72 40.3
FAN04G1424 Fragaria x ananassa HOM05D000762 ORTHO05D002234 1.9e-11 72.8 72 40.3
FAN08G3011 Fragaria x ananassa HOM05D000762 ORTHO05D002234 1.9e-11 72.8 72 40.3
FAN13G0552 Fragaria x ananassa HOM05D000762 ORTHO05D002234 3.3e-11 72.0 72 40.3
Nn3g17825 Nelumbo nucifera HOM05D000762 ORTHO05D002234 3.3e-11 72.0 52 59.6
Nitab4.5_0000974g0010 Nicotiana tabacum HOM05D000762 ORTHO05D002234 3.3e-11 72.0 53 54.7
SalBow5G3324 Salvia bowleyana HOM05D000762 ORTHO05D002234 3.3e-11 72.0 74 41.9
ECA233G0898 Erigeron canadensis HOM05D000762 ORTHO05D002234 4.3e-11 71.6 54 50.0
Cc04_g07180 Coffea canephora HOM05D000762 ORTHO05D002234 7.4e-11 70.9 64 51.6
CsaV3_1G003790 Cucumis sativus L. HOM05D000762 ORTHO05D002234 9.6e-11 70.5 52 55.8
Nitab4.5_0005886g0030 Nicotiana tabacum HOM05D000762 ORTHO05D002234 9.6e-11 70.5 53 52.8
CDE07G1332 Ceratophyllum demersum HOM05D000762 ORTHO05D002234 1.3e-10 70.1 52 51.9
DCAR_023204 Daucus carota HOM05D000762 ORTHO05D002234 1.3e-10 70.1 52 51.9
Sc10g0007330 Simmondsia chinensis HOM05D000762 ORTHO05D002234 1.3e-10 70.1 52 55.8
MELO3C017303.2 Cucumis melo HOM05D000762 ORTHO05D002234 1.6e-10 69.7 108 37.0
CiPaw.15G130000 Carya illinoinensis HOM05D000762 ORTHO05D002234 2.1e-10 69.3 52 55.8
TPR.G27935 Trifolium pratense HOM05D000762 ORTHO05D002234 2.1e-10 69.3 54 51.9
TAR629G0604 Trochodendron aralioides HOM05D000762 ORTHO05D002234 2.1e-10 69.3 83 39.8
Rhsim08G0135000 Rhododendron simsii HOM05D000762 ORTHO05D002234 2.8e-10 68.9 60 50.0
PSO017G2716 Papaver somniferum HOM05D000762 ORTHO05D002234 3.6e-10 68.6 71 40.8
RcHm_v2.0_Chr7g0185351 Rosa chinensis HOM05D000762 ORTHO05D002234 3.6e-10 68.6 71 39.4
Eucgr.K02220 Eucalyptus grandis HOM05D000762 ORTHO05D002234 4.8e-10 68.2 54 55.6
Lalb_Chr24g0397751 Lupinus albus HOM05D000762 ORTHO05D002234 6.2e-10 67.8 100 34.0
FAN18G0911 Fragaria x ananassa HOM05D000762 ORTHO05D002234 8.1e-10 67.4 72 38.9
ATR0686G047 Amborella trichopoda HOM05D000762 ORTHO05D002234 1.1e-09 67.0 54 53.7
HanXRQChr09g0250481 Helianthus annuus HOM05D000762 ORTHO05D002234 2.4e-09 65.9 53 49.1
MSTRG.11326 Avicennia marina HOM05D000762 ORTHO05D002234 3.1e-09 65.5 85 38.8
Eucgr.K02664 Eucalyptus grandis HOM05D000762 ORTHO05D002234 3.1e-09 65.5 54 44.4
Sed0020661 Sechium edule HOM05D000762 ORTHO05D002234 4.0e-09 65.1 52 51.9
Aqoxy3G00312 Aquilegia oxysepala HOM05D000762 ORTHO05D002234 6.9e-09 64.3 52 51.9
Nitab4.5_0001599g0100 Nicotiana tabacum HOM05D000762 ORTHO05D002234 6.9e-09 64.3 53 45.3
Solyc03g119710.4 Solanum lycopersicum HOM05D000762 ORTHO05D002234 1.2e-08 63.5 53 41.5
Sed0022944 Sechium edule HOM05D000762 ORTHO05D002234 2.0e-08 62.8 59 39.0
PGR044G2604 Punica granatum HOM05D000762 ORTHO05D002234 3.4e-08 62.0 58 36.2
Sopen03g038540 Solanum pennellii HOM05D000762 ORTHO05D002234 3.4e-08 62.0 53 41.5
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 3.4e-08 62.0 52 40.4
MELO3C017294.2 Cucumis melo HOM05D000762 ORTHO05D002234 4.5e-08 61.6 61 37.7
CsaV3_1G003690 Cucumis sativus L. HOM05D000762 ORTHO05D002234 4.5e-08 61.6 61 37.7
Prupe.5G218400 Prunus persica HOM05D000762 ORTHO05D002234 5.8e-08 61.2 53 41.5
ClCG06G014860 Citrullus lanatus HOM05D000762 ORTHO05D002234 7.6e-08 60.8 52 50.0
Haze_18630 Corylus avellana HOM05D000762 ORTHO05D002234 7.6e-08 60.8 53 43.4
Gohir.A11G006700 Gossypium hirsutum HOM05D000762 ORTHO05D002234 9.9e-08 60.5 53 39.6
Nitab4.5_0000410g0020 Nicotiana tabacum HOM05D000762 ORTHO05D002234 9.9e-08 60.5 55 41.8
Oeu031904.1 Olea europaea HOM05D000762 ORTHO05D002234 9.9e-08 60.5 60 48.3
Ciclev10020050m.g Citrus clementina HOM05D000762 ORTHO05D002234 1.3e-07 60.1 53 39.6
ClCG06G014950 Citrullus lanatus HOM05D000762 ORTHO05D002234 1.7e-07 59.7 61 36.1
Cc04_g07420 Coffea canephora HOM05D000762 ORTHO05D002234 1.7e-07 59.7 58 37.9
Gorai.007G007000 Gossypium raimondii HOM05D000762 ORTHO05D002234 1.7e-07 59.7 53 37.7
Aqoxy7G02004 Aquilegia oxysepala HOM05D000762 ORTHO05D002234 2.2e-07 59.3 53 47.2
Cpa.g.sc13.26 Carica papaya HOM05D000762 ORTHO05D002234 2.2e-07 59.3 64 35.9
Dinv40425 Davidia involucrata HOM05D000762 ORTHO05D002234 2.2e-07 59.3 53 37.7
Hma1.2p1_0592F.1_g185310 Hydrangea macrophylla HOM05D000762 ORTHO05D002234 2.2e-07 59.3 53 37.7
QL10p023568 Quercus lobata HOM05D000762 ORTHO05D002234 2.2e-07 59.3 54 42.6
MD06G1212300 Malus domestica HOM05D000762 ORTHO05D002234 2.9e-07 58.9 53 37.7
SGA_v2.0_scaffold22G09944 Striga asiatica HOM05D000762 ORTHO05D002234 2.9e-07 58.9 53 45.3
Atru.chr9.785 Acer truncatum HOM05D000762 ORTHO05D002234 3.8e-07 58.5 53 41.5
CDE02G0327 Ceratophyllum demersum HOM05D006746 ORTHO05D007812 3.8e-07 58.5 53 49.1
CDE05G0617 Ceratophyllum demersum HOM05D000762 ORTHO05D002234 4.9e-07 58.2 78 37.2
Thecc.03G030100 Theobroma cacao HOM05D000762 ORTHO05D002234 4.9e-07 58.2 56 39.3
Aqoxy3G00350 Aquilegia oxysepala HOM05D000762 ORTHO05D002234 6.4e-07 57.8 53 37.7
Carub.0003s1827 Capsella rubella HOM05D000762 ORTHO05D002234 6.4e-07 57.8 54 38.9
Lj4g0002171 Lotus japonicus HOM05D000762 ORTHO05D002234 6.4e-07 57.8 53 39.6
Thhalv10020715m.g Eutrema salsugineum HOM05D000762 ORTHO05D002234 8.4e-07 57.4 54 38.9
FAN04G0075 Fragaria x ananassa HOM05D000762 ORTHO05D002234 8.4e-07 57.4 53 41.5
FAN08G0280 Fragaria x ananassa HOM05D000762 ORTHO05D002234 8.4e-07 57.4 53 41.5
FAN13G1131 Fragaria x ananassa HOM05D000762 ORTHO05D002234 8.4e-07 57.4 53 41.5
Glyma.05G232800 Glycine max HOM05D000762 ORTHO05D002234 8.4e-07 57.4 53 35.8
GSVIVG01008252001 Vitis vinifera HOM05D000762 ORTHO05D002234 8.4e-07 57.4 54 37.0
arahy.Tifrunner.gnm1.ann1.3S4AIK Arachis hypogaea HOM05D000762 ORTHO05D002234 1.1e-06 57.0 53 37.7
arahy.Tifrunner.gnm1.ann1.SM35B1 Arachis hypogaea HOM05D000762 ORTHO05D002234 1.1e-06 57.0 53 37.7
FvH4_5g12590 Fragaria vesca HOM05D000762 ORTHO05D002234 1.1e-06 57.0 53 41.5
FAN18G2205 Fragaria x ananassa HOM05D000762 ORTHO05D002234 1.1e-06 57.0 53 41.5
Medtr8g103870 Medicago truncatula HOM05D000762 ORTHO05D002234 1.1e-06 57.0 53 35.8
RcHm_v2.0_Chr7g0184741 Rosa chinensis HOM05D000762 ORTHO05D002234 1.1e-06 57.0 53 39.6
CiPaw.16G084600 Carya illinoinensis HOM05D000762 ORTHO05D002234 1.4e-06 56.6 47 44.7
TPR.G21692 Trifolium pratense HOM05D000762 ORTHO05D002234 1.9e-06 56.2 53 35.8
Aa31LG8G5340 Aethionema arabicum HOM05D000762 ORTHO05D002234 2.4e-06 55.8 79 31.6
ATR0716G098 Amborella trichopoda HOM05D000762 ORTHO05D002234 2.4e-06 55.8 53 45.3
Migut.A00301 Erythranthe guttata HOM05D000762 ORTHO05D002234 2.4e-06 55.8 53 43.4
Nn4g23757 Nelumbo nucifera HOM05D000762 ORTHO05D002234 2.4e-06 55.8 48 41.7
AL3G31800 Arabidopsis lyrata HOM05D000762 ORTHO05D002234 3.2e-06 55.5 54 38.9
BcaB06g25894 Brassica carinata HOM05D000762 ORTHO05D002234 3.2e-06 55.5 54 37.0
A05p31130 Brassica napus HOM05D000762 ORTHO05D002234 3.2e-06 55.5 54 37.0
C05p47150 Brassica napus HOM05D000762 ORTHO05D002234 3.2e-06 55.5 54 37.0
BraA05t21955Z Brassica rapa HOM05D000762 ORTHO05D002234 3.2e-06 55.5 54 37.0
CARHR093860 Cardamine hirsuta HOM05D000762 ORTHO05D002234 3.2e-06 55.5 54 37.0
Rhsim07G0150500 Rhododendron simsii HOM05D000762 ORTHO05D002234 3.2e-06 55.5 53 47.2
vmacro05205 Vaccinium macrocarpon HOM05D000762 ORTHO05D002234 3.2e-06 55.5 53 45.3
AagrBONN_evm.TU.Sc2ySwM_117.2837 Anthoceros agrestis HOM05D000762 ORTHO05D002234 4.2e-06 55.1 51 43.1
CSS0016859 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D002234 4.2e-06 55.1 53 35.8
THA.LOC104820403 Tarenaya hassleriana HOM05D000762 ORTHO05D002234 4.2e-06 55.1 53 39.6
HPP92_024805 Vanilla planifolia HOM05D062443 ORTHO05D002234 4.2e-06 55.1 52 40.4
AT3G18500 Arabidopsis thaliana HOM05D000762 ORTHO05D002234 5.5e-06 54.7 54 37.0
Ca_17343_v3 Cicer arietinum L. HOM05D000762 ORTHO05D002234 5.5e-06 54.7 53 35.8
Lalb_Chr16g0387951 Lupinus albus HOM05D000762 ORTHO05D002234 5.5e-06 54.7 53 37.7
Manes.01G020000 Manihot esculenta HOM05D000762 ORTHO05D002234 5.5e-06 54.7 53 39.6
Pp3c1_25240 Physcomitrium patens HOM05D000762 ORTHO05D002234 5.5e-06 54.7 52 36.5
MBI04_g00949_MAGBIO Magnolia biondii HOM05D000762 ORTHO05D002234 7.1e-06 54.3 53 47.2
SalBow4G3109 Salvia bowleyana HOM05D000762 ORTHO05D002234 7.1e-06 54.3 53 43.4
Sed0004772 Sechium edule HOM05D000762 ORTHO05D002234 7.1e-06 54.3 53 45.3
Os06g0264900 Oryza sativa ssp. japonica HOM05D000762 ORTHO05D002234 9.3e-06 53.9 54 37.0
Psat7g012880 Pisum sativum HOM05D000762 ORTHO05D002234 9.3e-06 53.9 53 35.8


User provided reference genes

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