Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 1.2e-114 416.8 245 100.0
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 1.2e-114 416.8 245 100.0
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 1.2e-114 416.8 245 100.0
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 4.5e-106 388.3 245 81.2
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 7.6e-106 387.5 245 82.0
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 2.0e-90 336.3 247 74.5
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.6e-90 335.9 246 71.5
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 1.8e-83 313.2 246 67.5
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 1.8e-83 313.2 246 67.5
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 1.8e-83 313.2 246 67.5
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 3.1e-83 312.4 253 66.8
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.3e-81 307.0 249 67.1
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 3.2e-80 302.4 250 65.2
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.0e-78 295.8 253 66.0
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 5.7e-77 291.6 247 63.6
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 5.3e-75 285.0 250 63.6
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 2.5e-72 276.2 246 61.0
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 3.2e-72 275.8 248 66.1
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 1.6e-66 256.9 249 58.2
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 4.5e-66 255.4 247 64.0
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 4.5e-66 255.4 247 64.0
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 2.2e-65 253.1 246 58.9
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.2e-53 214.2 239 58.6
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 9.5e-48 194.5 251 47.8
BcaB02g07151 Brassica carinata HOM05D002704 ORTHO05D002891 1.5e-45 187.2 192 57.8
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 5.4e-43 178.7 250 47.2
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.2e-42 177.6 248 46.4
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.2e-34 151.0 247 46.2
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.0e-33 147.9 231 41.6
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.0e-33 146.4 248 41.1
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 6.6e-33 145.2 131 61.1
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 6.6e-33 145.2 131 61.1
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-32 144.4 254 42.1
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 1.1e-32 144.4 254 42.1
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.6e-31 140.6 248 40.3
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-30 137.9 246 38.6
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-30 136.0 248 38.7
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 4.0e-30 136.0 248 38.7
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 4.0e-30 136.0 248 38.7
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 6.8e-30 135.2 257 37.7
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 8.9e-30 134.8 257 37.7
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.7e-28 130.6 231 41.6
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-27 127.9 234 38.5
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 1.6e-26 124.0 249 39.8
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.6e-26 122.5 234 38.0
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.8e-26 121.7 234 37.6
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.0e-25 121.3 234 37.6
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-25 120.9 233 40.3
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.3e-24 116.3 83 65.1
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 7.3e-24 115.2 235 38.7
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 2.1e-23 113.6 235 35.7
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 2.1e-23 113.6 234 36.8
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 4.7e-23 112.5 189 41.8
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 1.4e-22 110.9 233 38.6
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.4e-22 110.2 183 37.2
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 4.0e-22 109.4 234 35.5
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 8.9e-22 108.2 254 37.0
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.2e-21 107.8 243 36.6
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.0e-21 107.1 188 38.3
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 2.2e-20 103.6 192 39.6
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 2.9e-20 103.2 187 40.1
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 3.8e-20 102.8 223 34.1
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 3.8e-20 102.8 198 36.9
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 8.4e-20 101.7 193 36.8
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.4e-19 100.9 183 39.3
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 5.4e-19 99.0 234 33.8
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.2e-18 97.8 169 38.5
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.5e-18 96.3 184 39.1
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.5e-18 96.3 183 36.1
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.7e-17 94.0 198 35.9
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 5.1e-17 92.4 189 36.5
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 5.1e-17 92.4 233 35.2
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 8.7e-17 91.7 177 39.0
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.1e-16 91.3 183 36.1
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 3.3e-16 89.7 190 35.3
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.6e-16 89.0 62 69.4
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.1e-15 87.0 176 42.0
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 2.8e-15 86.7 97 51.5
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.8e-15 86.7 192 38.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 3.6e-15 86.3 193 35.2
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 4.7e-15 85.9 188 34.0
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 4.7e-15 85.9 191 34.0
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 4.7e-15 85.9 188 34.0
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 4.7e-15 85.9 196 36.2
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 4.7e-15 85.9 166 39.2
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 6.2e-15 85.5 179 35.2
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 6.2e-15 85.5 183 35.5
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 6.2e-15 85.5 193 35.2
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 8.1e-15 85.1 181 33.7
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 8.1e-15 85.1 191 36.1
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 8.1e-15 85.1 181 35.4
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.1e-14 84.7 236 32.2
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.4e-14 84.3 188 35.6
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.4e-14 84.3 169 38.5
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 1.4e-14 84.3 188 32.4
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 1.8e-14 84.0 174 35.1
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 1.8e-14 84.0 76 56.6
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 4.0e-14 82.8 179 36.9
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 4.0e-14 82.8 191 34.6
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 4.0e-14 82.8 201 34.3
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 5.2e-14 82.4 185 34.6
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 9.0e-14 81.6 85 51.8
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 2.6e-13 80.1 158 34.8
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 2.6e-13 80.1 62 61.3
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.4e-13 79.7 174 35.1
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 3.4e-13 79.7 174 33.9
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 3.4e-13 79.7 241 33.6
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 4.4e-13 79.3 198 33.3
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 4.4e-13 79.3 184 35.9
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.8e-13 79.0 93 46.2
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 7.6e-13 78.6 178 35.4
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 9.9e-13 78.2 76 51.3
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 9.9e-13 78.2 61 59.0
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 9.9e-13 78.2 89 49.4
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 1.3e-12 77.8 188 34.0
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.7e-12 77.4 98 44.9
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 1.7e-12 77.4 101 44.6
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.7e-12 77.4 235 32.3
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.7e-12 77.4 195 33.3
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 2.2e-12 77.0 176 33.0
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.9e-12 76.6 182 35.2
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 2.9e-12 76.6 93 47.3
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 3.8e-12 76.3 58 62.1
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 3.8e-12 76.3 58 62.1
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 3.8e-12 76.3 103 44.7
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 3.8e-12 76.3 187 31.6
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.9e-12 75.9 182 34.1
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 4.9e-12 75.9 169 32.5
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 6.4e-12 75.5 182 34.6
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.4e-12 75.5 182 34.1
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 6.4e-12 75.5 67 53.7
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.1e-11 74.7 108 40.7
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 1.1e-11 74.7 197 32.0
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 1.1e-11 74.7 87 44.8
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.1e-11 74.7 48 68.8
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 1.4e-11 74.3 65 56.9
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.4e-11 74.3 176 33.0
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 1.4e-11 74.3 83 48.2
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.4e-11 74.3 185 34.1
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 2.4e-11 73.6 178 32.0
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.2e-11 73.2 193 33.7
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 3.2e-11 73.2 185 30.3
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 4.2e-11 72.8 101 41.6
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 7.1e-11 72.0 77 58.4
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 7.1e-11 72.0 214 31.8
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 7.1e-11 72.0 164 36.0
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 9.3e-11 71.6 172 32.6
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 9.3e-11 71.6 186 29.6
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 9.3e-11 71.6 177 33.9
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.3e-11 71.6 229 31.0
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 9.3e-11 71.6 82 53.7
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 9.3e-11 71.6 98 41.8
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.2e-10 71.2 47 66.0
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.2e-10 71.2 90 45.6
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.6e-10 70.9 189 33.3
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.1e-10 70.5 53 60.4
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.7e-10 70.1 175 32.6
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.7e-10 70.1 64 56.2
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 4.6e-10 69.3 183 31.7
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 4.6e-10 69.3 93 43.0
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 7.8e-10 68.6 87 41.4
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 7.8e-10 68.6 48 66.7
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.3e-09 67.0 168 29.8
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 3.9e-09 66.2 145 36.6
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 5.1e-09 65.9 174 31.6
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 6.6e-09 65.5 185 30.3
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 6.6e-09 65.5 96 43.8
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 6.6e-09 65.5 150 36.0
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 1.5e-08 64.3 40 67.5
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.5e-08 64.3 164 32.3
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.5e-08 64.3 100 38.0
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.9e-08 63.9 170 33.5
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 1.9e-08 63.9 79 44.3
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.5e-08 63.5 178 34.8
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.6e-08 62.4 171 33.3
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 7.3e-08 62.0 50 54.0
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.3e-07 61.2 181 30.4
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.1e-07 60.5 54 44.4
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.1e-07 60.5 54 44.4
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 4.8e-07 59.3 50 48.0
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 4.8e-07 59.3 32 68.8
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 1.1e-06 58.2 31 71.0
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 3.1e-06 56.6 38 57.9
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 9.0e-06 55.1 56 48.2
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 9.0e-06 55.1 56 48.2


User provided reference genes

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