Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 6.2e-310 1066.6 542 100.0
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 8.8e-296 1019.6 521 99.8
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.0e-291 1006.1 541 96.1
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 2.2e-278 961.8 528 93.8
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 8.5e-275 949.9 499 97.2
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 6.8e-272 940.3 500 95.4
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 8.9e-256 886.7 498 90.0
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.7e-249 864.4 498 88.0
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.3e-243 845.5 498 86.3
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.0e-243 844.3 498 85.9
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.1e-240 835.1 498 85.7
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.1e-240 835.1 498 84.9
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 6.8e-224 780.8 504 81.2
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.9e-213 746.1 504 76.6
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.5e-212 741.9 517 74.9
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 4.6e-212 741.5 508 75.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 7.9e-212 740.7 517 74.9
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.3e-209 733.4 504 75.2
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 3.1e-208 728.8 504 74.4
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 2.4e-205 719.2 538 70.1
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.8e-203 713.0 518 72.4
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.5e-202 709.9 519 72.4
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-201 706.8 519 72.3
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 8.1e-201 704.1 516 69.4
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 7.6e-199 697.6 529 67.5
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-198 696.4 519 71.7
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 4.9e-198 694.9 514 68.9
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.4e-197 693.3 519 71.7
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.9e-197 693.0 516 68.0
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 3.2e-197 692.2 530 67.7
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 9.3e-197 690.6 529 67.3
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.2e-196 690.3 516 67.8
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 3.5e-196 688.7 516 68.8
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 6.0e-196 688.0 515 68.0
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.8e-195 686.4 516 68.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.9e-195 685.3 516 68.4
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 6.7e-195 684.5 515 68.5
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 5.7e-194 681.4 516 66.3
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 7.4e-194 681.0 514 68.1
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 9.6e-194 680.6 530 65.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 1.6e-193 679.9 505 71.3
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.6e-193 679.9 529 66.0
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.6e-193 679.9 529 66.0
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 3.7e-193 678.7 518 67.6
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 4.8e-193 678.3 514 67.3
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 6.3e-193 677.9 529 67.1
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 2.4e-192 676.0 518 67.8
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 4.1e-192 675.2 512 67.8
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.2e-191 673.7 516 67.2
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.7e-190 669.8 531 65.7
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 6.5e-190 667.9 523 66.0
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 8.4e-190 667.5 514 66.1
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 8.4e-190 667.5 517 65.6
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.1e-189 667.2 512 65.8
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.9e-189 666.4 526 64.8
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.2e-189 665.6 529 66.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 7.2e-189 664.5 516 65.7
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 9.3e-189 664.1 516 66.7
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 1.2e-188 663.7 507 66.5
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 3.5e-188 662.1 518 65.8
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 3.5e-188 662.1 514 65.6
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 6.1e-188 661.4 516 65.7
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 6.1e-188 661.4 514 66.7
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.0e-187 660.6 510 66.3
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.3e-187 660.2 529 64.8
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.3e-187 659.4 535 63.7
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 3.0e-187 659.1 516 65.3
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 4.3e-186 655.2 528 64.4
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 5.7e-186 654.8 515 65.4
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 7.4e-186 654.4 513 66.1
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 9.7e-186 654.1 513 65.9
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 1.3e-185 653.7 521 63.7
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 1.3e-185 653.7 566 61.5
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 2.8e-185 652.5 509 65.0
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 2.8e-185 652.5 502 66.1
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 4.8e-185 651.7 512 65.2
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.8e-185 651.7 526 64.6
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.1e-184 650.6 529 63.1
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 2.4e-184 649.4 559 61.4
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 3.1e-184 649.0 525 64.4
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.1e-184 648.7 512 64.3
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.2e-183 647.1 514 65.4
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 1.0e-182 644.0 513 65.3
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 5.0e-182 641.7 517 63.2
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 8.5e-182 641.0 497 66.6
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.2e-181 638.6 511 63.2
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.2e-180 637.1 506 66.2
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 2.4e-176 622.9 542 61.3
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 4.1e-176 622.1 507 62.3
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 6.9e-176 621.3 463 67.8
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 4.2e-173 612.1 503 63.2
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 3.0e-171 605.9 528 59.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 6.3e-169 598.2 512 62.1
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 9.1e-168 594.3 490 64.1
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.9e-165 586.6 502 61.0
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.5e-165 586.3 505 61.0
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 7.2e-165 584.7 509 58.9
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.6e-162 576.2 518 60.0
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 4.4e-162 575.5 548 56.4
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.1e-160 570.9 511 58.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.2e-158 563.1 433 66.7
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.0e-155 554.3 526 57.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 3.4e-154 549.3 517 55.3
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 9.1e-152 541.2 438 63.0
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 3.8e-150 535.8 437 63.4
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 4.2e-149 532.3 516 56.8
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.6e-148 530.4 445 62.2
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 1.0e-147 527.7 513 55.9
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.1e-144 517.7 493 55.8
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.3e-129 467.6 445 57.8
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 5.4e-120 435.6 356 64.0
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.0e-118 431.4 521 46.8
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 6.6e-118 428.7 388 58.8
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.1e-117 427.9 527 45.9
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.9e-112 410.6 495 44.2
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 2.8e-108 396.7 386 55.7
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 4.5e-98 362.8 470 43.6
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 3.0e-86 323.6 473 44.0
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 3.7e-52 210.3 137 83.9
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.1e-48 198.7 139 71.2
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 9.7e-45 185.7 433 36.5
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 5.3e-43 179.9 123 69.1
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 4.1e-35 153.7 98 84.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 6.5e-33 146.4 270 39.3
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.8e-22 111.7 78 66.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.0e-22 110.9 115 61.7
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 1.5e-21 108.6 71 69.0
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.4e-19 102.1 79 62.0
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-19 100.1 143 32.9
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 1.6e-18 98.6 98 50.0
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 8.6e-17 92.8 72 66.7
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 4.0e-14 84.0 237 27.8
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 2.0e-10 71.6 40 90.0
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-09 67.8 53 52.8
BolC6t40376H Brassica oleracea HOM05D005650 ORTHO05D040396 8.1e-07 59.7 32 90.6


User provided reference genes

Program Settings