Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 1.2e-155 553.1 281 100.0
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 3.2e-108 395.6 199 100.0
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 2.7e-46 189.9 226 54.4
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 4.0e-42 176.0 221 49.8
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 9.9e-41 171.4 222 49.1
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 4.9e-40 169.1 234 46.2
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 2.4e-39 166.8 223 48.9
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 3.2e-39 166.4 228 47.8
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 6.6e-37 158.7 235 46.4
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.1e-36 157.9 222 46.4
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.9e-36 157.1 222 47.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 7.3e-36 155.2 242 44.6
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 2.4e-34 150.2 222 45.0
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.7e-32 144.1 221 47.5
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 4.6e-30 136.0 220 46.4
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 2.4e-26 123.6 98 66.3
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 5.2e-26 122.5 98 67.3
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 4.4e-25 119.4 84 72.6
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 7.6e-25 118.6 98 64.3
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.3e-24 117.9 84 71.4
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 1.3e-24 117.9 84 71.4
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 2.9e-24 116.7 98 62.2
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 4.9e-24 115.9 98 62.2
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 1.1e-23 114.8 98 61.2
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 1.4e-23 114.4 98 59.2
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 1.4e-23 114.4 98 59.2
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 1.9e-23 114.0 97 66.0
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 2.4e-23 113.6 98 63.3
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 3.2e-23 113.2 98 63.3
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 4.2e-23 112.8 98 61.2
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 9.3e-23 111.7 98 60.2
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 1.2e-22 111.3 94 59.6
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.6e-22 110.9 98 62.2
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 2.1e-22 110.5 143 46.9
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 2.7e-22 110.2 98 62.2
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.7e-22 110.2 98 61.2
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 4.6e-22 109.4 98 60.2
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 7.8e-22 108.6 98 60.2
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.3e-21 107.8 98 58.2
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.3e-21 107.8 98 58.2
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 1.7e-21 107.5 97 58.8
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 2.3e-21 107.1 102 59.8
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 2.3e-21 107.1 98 61.2
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 3.0e-21 106.7 98 58.2
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.9e-21 106.3 100 58.0
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 3.9e-21 106.3 98 58.2
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 5.1e-21 105.9 100 53.0
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 6.6e-21 105.5 98 58.2
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 1.1e-20 104.8 105 51.4
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 1.5e-20 104.4 99 56.6
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.9e-20 104.0 98 56.1
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.9e-20 104.0 98 56.1
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 1.9e-20 104.0 98 59.2
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.9e-20 104.0 100 58.0
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 4.3e-20 102.8 98 55.1
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 4.3e-20 102.8 109 52.3
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 4.3e-20 102.8 98 59.2
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 5.6e-20 102.4 84 63.1
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 7.3e-20 102.1 98 57.1
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 7.3e-20 102.1 96 60.4
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 9.6e-20 101.7 95 56.8
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 9.6e-20 101.7 98 56.1
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 9.6e-20 101.7 96 58.3
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 1.3e-19 101.3 98 55.1
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 2.1e-19 100.5 94 52.1
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 2.1e-19 100.5 84 63.1
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 3.6e-19 99.8 100 52.0
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 3.6e-19 99.8 100 52.0
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 4.8e-19 99.4 100 54.0
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 4.8e-19 99.4 98 52.0
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 8.1e-19 98.6 98 52.0
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 8.1e-19 98.6 84 61.9
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 1.1e-18 98.2 98 53.1
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 1.1e-18 98.2 94 52.1
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 1.4e-18 97.8 84 58.3
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 1.4e-18 97.8 100 52.0
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 1.8e-18 97.4 84 61.9
BcaC08g44971 Brassica carinata HOM05D000003 ORTHO05D000004 2.4e-18 97.1 76 53.9
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 4.0e-18 96.3 98 52.0
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 4.0e-18 96.3 111 50.5
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 9.0e-18 95.1 94 53.2
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 1.2e-17 94.7 94 53.2
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 1.5e-17 94.4 95 51.6
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 7.6e-17 92.0 130 46.2
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 1.3e-16 91.3 102 55.9
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 1.9e-15 87.4 72 58.3
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 2.4e-15 87.0 100 52.0
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 3.2e-15 86.7 100 52.0
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 2.1e-14 84.0 98 46.9
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 2.7e-14 83.6 77 55.8
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.6e-14 82.8 98 45.9
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 1.3e-13 81.3 84 48.8
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 3.0e-13 80.1 91 52.7
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 5.1e-13 79.3 90 51.1
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 6.7e-13 79.0 101 43.6
BolC2t07181H Brassica oleracea HOM05D000003 ORTHO05D000283 8.7e-13 78.6 65 49.2
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.1e-12 78.2 55 63.6
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 1.5e-12 77.8 58 60.3
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 3.3e-12 76.6 55 61.8
C04p09320 Brassica napus HOM05D000003 ORTHO05D000283 4.3e-12 76.3 81 43.2
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.6e-12 75.9 105 42.9
BraA01t01398Z Brassica rapa HOM05D000003 ORTHO05D000283 7.4e-12 75.5 61 47.5
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 7.4e-12 75.5 90 51.1
BraA09t38940Z Brassica rapa HOM05D000003 ORTHO05D000283 9.6e-12 75.1 66 47.0
BcaB04g19231 Brassica carinata HOM05D000003 ORTHO05D000283 1.3e-11 74.7 61 42.6
BcaC03g17941 Brassica carinata HOM05D000003 ORTHO05D000283 3.7e-11 73.2 72 44.4
AL1G56200 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 4.8e-11 72.8 112 33.9
BolC5t31190H Brassica oleracea HOM05D000003 ORTHO05D000283 4.8e-11 72.8 140 27.9
BolC5t32204H Brassica oleracea HOM05D000003 ORTHO05D000283 4.8e-11 72.8 65 44.6
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 6.2e-11 72.4 65 52.3
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.1e-11 72.0 97 45.4
BolC6t37177H Brassica oleracea HOM05D000003 ORTHO05D000283 1.1e-10 71.6 68 42.6
AL3G43240 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 1.4e-10 71.2 72 40.3
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.4e-10 71.2 100 44.0
BolC1t03920H Brassica oleracea HOM05D000003 ORTHO05D000283 2.4e-10 70.5 65 40.0
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 4.0e-10 69.7 95 42.1
C08p07500 Brassica napus HOM05D000003 ORTHO05D000283 5.3e-10 69.3 78 38.5
BolC2t07536H Brassica oleracea HOM05D000003 ORTHO05D000283 6.9e-10 68.9 68 39.7
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 6.9e-10 68.9 60 51.7
AL1G41870 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 1.2e-09 68.2 114 36.8
BcaB02g09394 Brassica carinata HOM05D000003 ORTHO05D000283 2.0e-09 67.4 66 42.4
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 2.6e-09 67.0 63 57.1
Sp2g02500 Schrenkiella parvula HOM05D000003 ORTHO05D000283 2.6e-09 67.0 82 37.8
Sp2g03860 Schrenkiella parvula HOM05D000003 ORTHO05D000283 2.6e-09 67.0 71 45.1
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 3.4e-09 66.6 35 94.3
BraA07t28299Z Brassica rapa HOM05D000003 ORTHO05D000283 3.4e-09 66.6 78 39.7
BcaC02g11961 Brassica carinata HOM05D000003 ORTHO05D000283 4.5e-09 66.2 60 45.0
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 4.5e-09 66.2 73 47.9
BcaC06g35549 Brassica carinata HOM05D000003 ORTHO05D000283 9.9e-09 65.1 66 40.9
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 9.9e-09 65.1 65 47.7
BcaC04g19019 Brassica carinata HOM05D000003 ORTHO05D000283 1.3e-08 64.7 61 37.7
BcaC06g36136 Brassica carinata HOM05D000003 ORTHO05D000283 1.3e-08 64.7 59 40.7
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 2.9e-08 63.5 90 41.1
ECA236G2591 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-08 62.8 57 43.9
ECA236G2789 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-08 62.8 59 42.4
ECA246G2423 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.9e-08 62.8 59 42.4
BraA09t37459Z Brassica rapa HOM05D023097 ORTHO05D024232 6.4e-08 62.4 52 46.2
BolC7t43339H Brassica oleracea HOM05D000003 ORTHO05D000283 8.4e-08 62.0 68 38.2
BcaC05g27506 Brassica carinata HOM05D000003 ORTHO05D000283 1.1e-07 61.6 55 47.3
BcaC05g29848 Brassica carinata HOM05D000003 ORTHO05D000283 1.9e-07 60.8 57 42.1
BcaC09g48789 Brassica carinata HOM05D000003 ORTHO05D000283 1.9e-07 60.8 57 42.1
AL4G24940 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 3.2e-07 60.1 103 29.1
Carub.0002s0853 Capsella rubella HOM05D000003 ORTHO05D000283 3.2e-07 60.1 127 26.0
BraA05t22459Z Brassica rapa HOM05D000003 ORTHO05D000283 4.2e-07 59.7 55 41.8
BcaB01g01489 Brassica carinata HOM05D000003 ORTHO05D000283 5.5e-07 59.3 64 37.5
BolC3t21561H Brassica oleracea HOM05D000003 ORTHO05D000283 1.2e-06 58.2 76 40.8
BraA06t23500Z Brassica rapa HOM05D000003 ORTHO05D000283 1.2e-06 58.2 88 37.5
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 1.2e-06 58.2 105 35.2
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.6e-06 57.8 75 44.0
BcaC06g35806 Brassica carinata HOM05D000003 ORTHO05D000283 2.1e-06 57.4 78 34.6
BolC8t47863H Brassica oleracea HOM05D000003 ORTHO05D000283 2.1e-06 57.4 42 57.1
ECA232G3483 Erigeron canadensis HOM05D000003 ORTHO05D000283 2.7e-06 57.0 80 32.5
BcaB04g17341 Brassica carinata HOM05D000003 ORTHO05D000283 3.5e-06 56.6 42 54.8
BraA08t32771Z Brassica rapa HOM05D000003 ORTHO05D000283 3.5e-06 56.6 58 43.1
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 3.5e-06 56.6 44 56.8
A03p14250 Brassica napus HOM05D000003 ORTHO05D000283 4.6e-06 56.2 65 41.5
BolC1t01970H Brassica oleracea HOM05D000003 ORTHO05D000283 4.6e-06 56.2 66 40.9
BraA01t02789Z Brassica rapa HOM05D000003 ORTHO05D000283 4.6e-06 56.2 63 46.0
Nitab4.5_0007166g0050 Nicotiana tabacum HOM05D000003 ORTHO05D000283 4.6e-06 56.2 63 38.1
Dinv04241 Davidia involucrata HOM05D013547 ORTHO05D000283 7.9e-06 55.5 47 44.7


User provided reference genes

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