Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p27830 Brassica napus HOM05D015877 ORTHO05D017411 8.3e-286 986.5 550 100.0
BcaC08g45159 Brassica carinata HOM05D015877 ORTHO05D017411 3.2e-285 984.6 550 99.8
C06p27890 Brassica napus HOM05D015877 ORTHO05D017411 2.8e-164 582.8 345 100.0
BolC6t37949H Brassica oleracea HOM05D015877 ORTHO05D017411 1.8e-110 404.1 197 99.5
AL5G43800 Arabidopsis lyrata HOM05D015877 ORTHO05D017411 6.9e-38 162.9 402 29.9
AT5G28420 Arabidopsis thaliana HOM05D015877 ORTHO05D017411 6.2e-15 86.7 106 44.3
SGA_v2.0_scaffold45G17301 Striga asiatica HOM05D000001 ORTHO05D000003 1.3e-12 79.0 152 32.2
Zm00001eb015140 Zea mays HOM05D000001 ORTHO05D000003 5.5e-11 73.6 185 27.6
Os03g0317100 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 9.3e-11 72.8 165 27.3
CiPaw.15G031700 Carya illinoinensis HOM05D000001 ORTHO05D000003 6.1e-10 70.1 281 23.8
Glyma.16G152800 Glycine max HOM05D000001 ORTHO05D000003 1.0e-09 69.3 274 25.5
Migut.N03252 Erythranthe guttata HOM05D000001 ORTHO05D009739 1.3e-09 68.9 164 31.1
Nn3g18606 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.3e-09 68.9 294 25.2
Phvul.008G079600 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.8e-09 68.6 165 26.7
Zm00001eb035760 Zea mays HOM05D000001 ORTHO05D000003 3.0e-09 67.8 205 26.3
BraA09t38821Z Brassica rapa HOM05D000001 ORTHO05D009923 5.1e-09 67.0 165 27.3
Cfa002550 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.1e-09 67.0 230 26.1
PSO063G1599 Papaver somniferum HOM05D000001 ORTHO05D000003 6.7e-09 66.6 194 25.8
QL12p009527 Quercus lobata HOM05D000001 ORTHO05D000003 8.7e-09 66.2 230 25.7
COL.COLO4_18568 Corchorus olitorius HOM05D000001 ORTHO05D013582 1.5e-08 65.5 303 20.5
CsaV3_1G003230 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.5e-08 65.5 180 26.1
HanXRQChr16g0531501 Helianthus annuus HOM05D000001 ORTHO05D000003 1.5e-08 65.5 190 26.3
MELO3C008015.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.9e-08 65.1 166 27.7
Psat7g262720 Pisum sativum HOM05D000001 ORTHO05D000003 1.9e-08 65.1 165 26.1
Carub.0007s2601 Capsella rubella HOM05D000001 ORTHO05D010150 2.5e-08 64.7 138 30.4
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 3.3e-08 64.3 213 28.2
VMungo0647G2332 Vigna mungo HOM05D000001 ORTHO05D000003 3.3e-08 64.3 165 25.5
Zm00001eb344620 Zea mays HOM05D000001 ORTHO05D000003 3.3e-08 64.3 234 25.2
arahy.Tifrunner.gnm1.ann1.NSD9NK Arachis hypogaea HOM05D000001 ORTHO05D000003 4.3e-08 63.9 200 27.5
Glyma.18G262200 Glycine max HOM05D000001 ORTHO05D000003 4.3e-08 63.9 132 30.3
Atru.chr2.1708 Acer truncatum HOM05D000001 ORTHO05D009790 7.4e-08 63.2 181 27.6
Ca_07789_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 9.7e-08 62.8 165 25.5
Psat3g117280 Pisum sativum HOM05D000001 ORTHO05D000003 9.7e-08 62.8 165 26.1
PGR102G1171 Punica granatum HOM05D000001 ORTHO05D010162 9.7e-08 62.8 184 23.9
unitig_62.g23524 Utricularia gibba HOM05D000001 ORTHO05D010004 9.7e-08 62.8 164 23.8
DCAR_031693 Daucus carota HOM05D000001 ORTHO05D000003 1.3e-07 62.4 165 27.9
Cc10_g13000 Coffea canephora HOM05D000001 ORTHO05D010004 1.6e-07 62.0 164 25.6
Hma1.2p1_0158F.1_g069910 Hydrangea macrophylla HOM05D000001 ORTHO05D010426 1.6e-07 62.0 166 28.9
MBI08_g17983_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.6e-07 62.0 179 26.8
Nn1g07642 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.6e-07 62.0 180 26.1
VMungo0251G0234 Vigna mungo HOM05D000001 ORTHO05D010118 1.6e-07 62.0 184 28.3
AagrBONN_evm.TU.Sc2ySwM_344.3539 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-07 61.6 164 27.4
AL8G38300 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 2.2e-07 61.6 147 29.3
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 2.2e-07 61.6 261 23.0
Prupe.3G261400 Prunus persica HOM05D000001 ORTHO05D009236 2.2e-07 61.6 166 27.7
RcHm_v2.0_Chr3g0450051 Rosa chinensis HOM05D000001 ORTHO05D000003 2.2e-07 61.6 212 28.3
Thecc.03G244000 Theobroma cacao HOM05D000001 ORTHO05D000003 2.8e-07 61.2 165 27.3
GSVIVG01031849001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.8e-07 61.2 180 25.6
CAN.G247.11 Capsicum annuum HOM05D000001 ORTHO05D000003 3.7e-07 60.8 151 27.2
Zm00001eb293520 Zea mays HOM05D000001 ORTHO05D000003 3.7e-07 60.8 179 24.0
MSTRG.9202 Avicennia marina HOM05D000001 ORTHO05D000003 4.8e-07 60.5 131 29.8
CANSAT56G1218 Cannabis sativa HOM05D000001 ORTHO05D000003 4.8e-07 60.5 289 23.2
Cpa.g.c32383.2 Carica papaya HOM05D000001 ORTHO05D009667 4.8e-07 60.5 286 23.1
THA.LOC104823713 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 4.8e-07 60.5 179 25.7
AagrBONN_evm.TU.Sc2ySwM_228.5110 Anthoceros agrestis HOM05D000446 ORTHO05D000321 6.3e-07 60.1 178 29.8
HanXRQChr05g0155511 Helianthus annuus HOM05D000001 ORTHO05D000003 6.3e-07 60.1 136 30.9
Thecc.02G361500 Theobroma cacao HOM05D000001 ORTHO05D011287 6.3e-07 60.1 166 25.3
AagrBONN_evm.TU.Sc2ySwM_362.1332__1333 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.2e-07 59.7 165 29.1
Dinv13703 Davidia involucrata HOM05D000001 ORTHO05D010118 8.2e-07 59.7 192 25.0
Migut.A00180 Erythranthe guttata HOM05D000001 ORTHO05D000003 8.2e-07 59.7 193 24.9
Sc01g0008160 Simmondsia chinensis HOM05D000001 ORTHO05D000003 8.2e-07 59.7 184 25.0
Os01g0205200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 1.1e-06 59.3 193 24.4
PSO478G0042 Papaver somniferum HOM05D000001 ORTHO05D000003 1.1e-06 59.3 135 28.9
Phvul.005G120500 Phaseolus vulgaris HOM05D000001 ORTHO05D010696 1.1e-06 59.3 270 23.7
ClCG04G006010 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.4e-06 58.9 165 23.0
Medtr8g096030 Medicago truncatula HOM05D000001 ORTHO05D010118 1.4e-06 58.9 164 27.4
Potri.012G110800 Populus trichocarpa HOM05D000001 ORTHO05D010118 1.4e-06 58.9 188 28.2
ATR0582G312 Amborella trichopoda HOM05D000001 ORTHO05D000003 1.8e-06 58.5 212 22.2
AL7G39682 Arabidopsis lyrata HOM05D000001 ORTHO05D010150 1.8e-06 58.5 262 20.2
FAN09G1015 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-06 58.5 192 27.6
Potri.001G369900 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.8e-06 58.5 163 27.0
Potri.006G001200 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.8e-06 58.5 164 27.4
Sc19g0000180 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.8e-06 58.5 165 26.7
Thecc.07G009500 Theobroma cacao HOM05D000001 ORTHO05D000003 1.8e-06 58.5 192 26.0
CARHR290120 Cardamine hirsuta HOM05D000001 ORTHO05D010150 2.4e-06 58.2 133 29.3
MELO3C019152.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.4e-06 58.2 165 22.4
AagrBONN_evm.TU.Sc2ySwM_228.1594 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-06 57.8 201 27.4
Cpa.g.sc162.15 Carica papaya HOM05D000001 ORTHO05D000003 3.1e-06 57.8 167 30.5
ClCG01G017160 Citrullus lanatus HOM05D000001 ORTHO05D000003 3.1e-06 57.8 197 25.4
QL04p026439 Quercus lobata HOM05D000001 ORTHO05D000003 3.1e-06 57.8 164 26.2
Zm00001eb278240 Zea mays HOM05D000001 ORTHO05D000003 3.1e-06 57.8 127 29.1
Atru.chr3.3954 Acer truncatum HOM05D000001 ORTHO05D010418 4.1e-06 57.4 180 22.8
ATR0743G214 Amborella trichopoda HOM05D000001 ORTHO05D000003 4.1e-06 57.4 153 26.1
AagrBONN_evm.TU.Sc2ySwM_344.1328 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 57.4 167 28.1
MSTRG.19973 Avicennia marina HOM05D000001 ORTHO05D000003 4.1e-06 57.4 162 24.7
CsaV3_4G029130 Cucumis sativus L. HOM05D000001 ORTHO05D000003 4.1e-06 57.4 165 22.4
FvH4_5g09900 Fragaria vesca HOM05D000001 ORTHO05D010118 4.1e-06 57.4 154 27.3
Oeu033988.1 Olea europaea HOM05D000001 ORTHO05D000003 4.1e-06 57.4 166 28.9
PSO170G5231 Papaver somniferum HOM05D000001 ORTHO05D010150 4.1e-06 57.4 166 27.1
Potri.001G100600 Populus trichocarpa HOM05D000001 ORTHO05D011055 4.1e-06 57.4 150 26.7
BcaC05g30012 Brassica carinata HOM05D000001 ORTHO05D000003 5.3e-06 57.0 133 28.6
C05p61950 Brassica napus HOM05D000001 ORTHO05D000003 5.3e-06 57.0 133 28.6
CiPaw.06G014400 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.3e-06 57.0 164 25.6
Gorai.008G186600 Gossypium raimondii HOM05D000001 ORTHO05D011287 5.3e-06 57.0 202 23.8
Lalb_Chr07g0183901 Lupinus albus HOM05D000001 ORTHO05D010118 5.3e-06 57.0 164 26.8
Psat5g020960 Pisum sativum HOM05D000001 ORTHO05D010118 5.3e-06 57.0 164 25.6
Solyc03g093630.3 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.3e-06 57.0 151 25.2
BraA05t21607Z Brassica rapa HOM05D000001 ORTHO05D010004 6.9e-06 56.6 162 21.6
Ciclev10014627m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.9e-06 56.6 165 27.9
Nn1g07555 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.9e-06 56.6 173 27.2
Rhsim11G0170500 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.9e-06 56.6 147 27.9
Sabra06G0001300 Salix brachista HOM05D000001 ORTHO05D000003 6.9e-06 56.6 151 28.5
PGSC0003DMG401018797 Solanum tuberosum HOM05D000001 ORTHO05D000003 6.9e-06 56.6 149 25.5
Thecc.04G282300 Theobroma cacao HOM05D000001 ORTHO05D010150 6.9e-06 56.6 166 23.5
AagrBONN_evm.TU.Sc2ySwM_228.5525 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-06 56.2 234 24.4
AagrBONN_evm.TU.Sc2ySwM_228.5716 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-06 56.2 146 26.0
AT3G63370 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 9.0e-06 56.2 208 26.0
CDE08G1060 Ceratophyllum demersum HOM05D000001 ORTHO05D015413 9.0e-06 56.2 180 25.0
FAN04G2197 Fragaria x ananassa HOM05D000001 ORTHO05D010118 9.0e-06 56.2 154 27.3
FAN13G3195 Fragaria x ananassa HOM05D000001 ORTHO05D010118 9.0e-06 56.2 154 27.3
Sopen03g024500 Solanum pennellii HOM05D000001 ORTHO05D000003 9.0e-06 56.2 151 25.2


User provided reference genes

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