Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.4e-306 1055.4 525 100.0
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.4e-306 1055.4 525 100.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.6e-302 1040.4 547 95.8
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.5e-292 1008.8 519 96.5
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.1e-274 949.5 528 92.6
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.2e-268 929.5 523 90.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.1e-266 921.4 473 97.5
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.1e-266 921.0 527 89.2
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.4e-266 920.6 473 97.5
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.7e-265 918.3 517 89.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 3.3e-263 911.4 527 89.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 3.6e-262 907.9 523 89.1
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.6e-246 855.9 515 84.1
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 6.2e-246 854.0 528 82.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.6e-222 775.0 495 77.6
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.1e-221 773.5 507 78.1
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.6e-220 768.8 511 76.9
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 9.9e-220 766.9 504 77.8
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 4.9e-219 764.6 523 75.7
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 8.4e-219 763.8 445 87.9
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.4e-218 762.3 504 77.4
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.6e-217 759.6 511 75.7
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.7e-217 758.8 503 75.9
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 6.0e-217 757.7 503 75.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.9e-217 757.3 494 77.9
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.0e-216 756.9 501 76.0
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.3e-216 756.5 506 76.5
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.0e-216 755.4 504 76.6
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.1e-216 754.6 503 75.5
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.9e-215 752.7 519 74.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 4.3e-215 751.5 496 75.8
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 4.3e-215 751.5 517 73.7
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.6e-215 751.1 495 75.6
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 7.3e-215 750.7 520 75.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-214 750.0 496 75.6
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.1e-214 749.2 496 75.6
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.1e-214 747.3 495 75.6
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 8.1e-214 747.3 510 74.1
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.8e-213 746.1 517 73.5
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.2e-212 743.4 501 74.7
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 3.4e-212 741.9 509 74.3
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.2e-210 734.9 503 74.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.2e-209 733.4 500 73.8
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.1e-209 732.6 544 71.0
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 6.0e-209 731.1 492 74.8
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.3e-208 729.9 492 75.0
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 5.3e-205 718.0 542 70.3
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 6.9e-205 717.6 516 70.9
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.0e-205 717.2 501 72.7
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.5e-204 716.5 475 77.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.8e-204 714.5 514 72.4
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.6e-204 714.1 502 71.5
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 6.5e-203 711.1 516 71.7
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 8.4e-203 710.7 514 71.4
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.4e-202 709.9 504 73.2
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.9e-202 709.5 533 70.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.5e-202 709.1 514 71.2
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 4.2e-202 708.4 512 70.7
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 5.5e-202 708.0 517 71.2
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.3e-200 703.4 498 72.3
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.8e-200 703.0 458 78.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.0e-200 702.2 509 71.3
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 5.1e-200 701.4 524 69.1
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.7e-200 701.0 514 71.6
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.7e-200 700.7 490 73.5
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.5e-199 699.1 513 70.2
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.3e-198 696.8 555 66.8
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.6e-198 696.4 500 70.8
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.1e-198 696.0 548 67.9
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.1e-198 696.0 495 71.5
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.7e-198 695.3 510 68.6
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 8.2e-198 694.1 514 69.8
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 6.9e-197 691.0 517 71.2
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.5e-196 689.9 508 70.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.5e-196 689.9 531 67.8
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.0e-196 689.5 500 70.2
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.0e-195 687.2 496 70.2
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.9e-194 682.9 531 67.2
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 9.3e-194 680.6 515 69.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.2e-193 680.2 522 68.4
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.7e-193 679.1 529 68.8
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 8.7e-192 674.1 508 68.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.8e-190 668.3 518 68.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 4.1e-189 665.2 494 70.4
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.6e-188 662.5 531 66.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 3.4e-188 662.1 534 66.1
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.5e-187 657.9 477 70.0
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.2e-185 653.7 589 60.8
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.0e-184 650.6 486 67.5
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 6.7e-184 647.9 428 77.6
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 3.1e-181 639.0 496 68.5
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.4e-180 635.6 509 64.8
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.2e-179 632.9 506 66.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.9e-178 629.8 521 63.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.5e-178 629.4 361 90.6
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.8e-174 615.1 512 62.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 5.5e-170 601.7 532 61.7
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.7e-169 598.6 412 73.5
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 7.0e-165 584.7 516 59.7
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 6.5e-163 578.2 476 65.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.1e-161 573.2 521 58.0
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.3e-158 561.6 484 59.5
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.8e-157 560.1 484 58.5
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 8.5e-155 551.2 485 58.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-154 550.8 493 57.6
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.2e-154 549.3 458 64.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.4e-149 533.1 366 80.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 7.0e-149 531.6 504 55.4
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 7.0e-149 531.6 377 71.6
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 8.6e-147 524.6 335 77.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.0e-144 515.8 477 56.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 4.9e-142 508.8 483 54.7
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 9.2e-141 504.6 519 52.4
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 7.3e-138 495.0 360 73.9
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.8e-137 493.0 488 53.1
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 6.8e-136 488.4 397 64.5
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.5e-135 487.3 485 54.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 7.5e-135 485.0 359 71.3
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 4.9e-134 482.3 289 81.0
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.9e-133 480.3 375 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.7e-129 465.7 501 49.9
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.1e-128 463.0 352 69.3
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.4e-125 453.4 342 72.2
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.4e-111 406.0 428 55.6
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.6e-107 392.1 421 48.5
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.5e-103 379.4 479 49.3
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.1e-97 360.5 317 62.5
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 6.4e-94 349.0 209 90.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.8e-87 325.9 249 67.5
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.8e-81 307.0 245 66.9
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.5e-79 299.7 320 55.6
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.7e-74 282.0 153 84.3
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-73 280.8 197 67.0
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.1e-72 278.5 303 54.1
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.1e-66 258.5 396 38.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.4e-66 256.5 136 87.5
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 6.9e-64 249.2 151 78.8
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 6.1e-60 236.1 308 41.9
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.0e-59 235.3 149 76.5
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.7e-49 201.4 330 39.1
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 2.0e-42 177.9 165 55.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.9e-39 166.4 100 75.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.0e-36 156.0 100 72.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.5e-29 134.4 192 45.3
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 6.8e-27 126.3 382 28.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-26 125.6 68 82.4
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.8e-23 112.8 120 59.2
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 2.4e-16 91.3 61 73.8
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.2e-16 90.9 446 24.4
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 4.7e-12 77.0 72 55.6
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.7e-12 77.0 45 77.8
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.4e-10 70.5 38 78.9
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 7.5e-10 69.7 117 45.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-09 68.2 84 44.0
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.4e-09 66.6 83 47.0
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.1e-08 63.9 64 53.1
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.6e-06 56.6 31 67.7


User provided reference genes

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