Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 2.1e-194 682.2 337 100.0
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 2.1e-194 682.2 337 100.0
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.9e-187 659.1 339 96.8
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 2.3e-185 652.1 339 96.8
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 2.1e-183 645.6 338 95.6
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.8e-183 645.2 337 96.1
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 4.3e-168 594.7 343 88.6
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 2.6e-165 585.5 342 88.9
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 5.5e-163 577.8 343 86.9
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 7.9e-162 573.9 348 85.9
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 1.0e-161 573.5 352 84.4
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 1.3e-161 573.2 343 86.6
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 6.7e-145 517.7 342 78.1
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 4.4e-128 461.8 226 100.0
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.7e-125 452.6 356 66.3
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 9.1e-118 427.6 354 63.3
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 9.8e-112 407.5 334 63.5
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 2.5e-107 392.9 361 58.4
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 8.3e-103 377.9 352 57.1
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 3.2e-102 375.9 361 57.3
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 4.1e-102 375.6 342 60.2
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 5.4e-102 375.2 342 59.9
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 7.0e-102 374.8 359 56.3
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 4.6e-101 372.1 313 58.8
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.7e-100 370.2 277 66.8
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 6.6e-100 368.2 353 55.0
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.9e-99 366.7 350 55.1
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.3e-99 365.5 313 58.8
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 1.6e-98 363.6 359 55.7
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 3.1e-97 359.4 226 73.9
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 4.0e-97 359.0 344 52.9
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 8.9e-97 357.8 226 73.0
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.5e-96 357.1 349 56.4
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 2.0e-96 356.7 345 55.9
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 4.4e-96 355.5 351 53.6
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 2.2e-95 353.2 270 65.9
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 2.9e-95 352.8 310 56.8
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 3.7e-95 352.4 230 71.3
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 6.4e-95 351.7 354 53.7
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 8.3e-95 351.3 260 64.2
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 1.1e-94 350.9 355 54.6
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.1e-94 350.9 336 56.8
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 1.9e-94 350.1 237 67.5
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 2.4e-94 349.7 345 54.2
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 3.2e-94 349.4 229 68.6
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 4.1e-94 349.0 221 75.6
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 5.4e-94 348.6 319 54.5
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 9.2e-94 347.8 250 65.6
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 2.1e-93 346.7 342 56.1
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 2.1e-93 346.7 342 52.9
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.1e-93 346.7 267 62.9
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.5e-93 345.9 267 61.4
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.6e-93 345.5 362 54.4
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 6.0e-93 345.1 341 54.5
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 7.8e-93 344.7 237 67.1
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 1.0e-92 344.4 221 73.3
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.3e-92 344.0 355 55.2
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 1.3e-92 344.0 320 57.8
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 3.9e-92 342.4 226 70.8
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.1e-92 342.0 225 71.1
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 5.1e-92 342.0 225 71.1
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 1.5e-91 340.5 237 67.1
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 3.3e-91 339.3 225 70.7
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 4.3e-91 339.0 225 69.8
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 5.6e-91 338.6 332 51.8
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 7.3e-91 338.2 332 51.5
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.5e-91 337.8 220 70.9
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 9.5e-91 337.8 237 67.1
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 9.5e-91 337.8 345 53.6
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 9.5e-91 337.8 225 70.2
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 2.1e-90 336.7 234 67.1
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 2.8e-90 336.3 293 59.0
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.8e-90 336.3 332 51.2
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 6.2e-90 335.1 226 71.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 6.2e-90 335.1 222 69.8
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 6.2e-90 335.1 232 67.2
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.4e-89 334.0 224 69.2
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 2.3e-89 333.2 225 68.0
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 3.1e-89 332.8 228 67.1
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 4.0e-89 332.4 371 50.7
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 6.8e-89 331.6 381 48.3
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.5e-88 330.5 250 62.8
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 5.8e-88 328.6 225 66.7
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 3.7e-87 325.9 226 67.3
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 2.4e-86 323.2 225 68.4
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 2.4e-86 323.2 221 68.3
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 7.1e-86 321.6 303 52.8
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 1.2e-85 320.9 320 54.1
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.5e-85 319.3 342 49.7
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 3.9e-84 315.8 291 54.0
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 3.9e-84 315.8 313 55.3
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 5.1e-84 315.5 301 53.8
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.5e-83 313.2 226 61.5
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 4.3e-83 312.4 207 69.6
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 4.7e-82 308.9 226 60.6
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 6.2e-82 308.5 254 59.1
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 8.1e-82 308.1 302 56.0
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.1e-81 307.8 309 53.4
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 1.7e-79 300.4 292 53.8
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 5.4e-78 295.4 215 66.0
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 5.4e-78 295.4 223 61.4
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.9e-75 287.0 343 46.4
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.3e-75 286.2 216 59.7
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 4.3e-75 285.8 235 59.6
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.4e-73 280.8 198 66.7
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 5.3e-73 278.9 213 60.6
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 6.9e-73 278.5 295 50.2
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 6.9e-73 278.5 225 57.8
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.9e-70 270.4 365 43.3
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 9.3e-70 268.1 215 56.3
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 1.0e-68 264.6 165 74.5
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.0e-68 264.6 215 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.1e-68 262.3 240 51.2
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 3.3e-67 259.6 215 54.9
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 4.3e-67 259.2 224 54.9
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 6.9e-65 251.9 211 54.5
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 2.6e-64 250.0 151 73.5
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 9.9e-64 248.1 216 55.6
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.9e-63 246.5 341 40.8
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 3.8e-63 246.1 153 76.5
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.9e-59 233.8 226 56.6
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 3.3e-59 233.0 187 59.4
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.5e-56 224.2 155 70.3
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 1.1e-51 208.0 182 53.8
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 4.1e-49 199.5 141 62.4
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 9.0e-49 198.4 216 45.8
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 4.8e-42 176.0 337 35.6
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.1e-35 154.8 164 45.1
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 5.7e-35 152.5 237 38.4
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.1e-33 148.3 145 47.6
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.8e-33 147.5 98 73.5
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 2.8e-26 123.6 102 53.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 2.1e-21 107.5 67 76.1
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 3.6e-21 106.7 82 58.5
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 2.2e-18 97.4 58 89.7
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 5.3e-17 92.8 59 72.9
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 3.5e-08 63.5 38 78.9
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 8.5e-07 58.9 72 43.1


User provided reference genes

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