Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p24700 Brassica napus HOM05D000602 ORTHO05D014076 1.3e-31 139.0 68 100.0
BolC6t37624H Brassica oleracea HOM05D000602 ORTHO05D014076 1.7e-26 122.1 66 87.9
C04p23250 Brassica napus HOM05D000602 ORTHO05D014076 1.8e-09 65.5 31 96.8
BolC4t23827H Brassica oleracea HOM05D000602 ORTHO05D014076 1.8e-09 65.5 31 96.8
Hund27307 Selenicereus undatus HOM05D000602 ORTHO05D002573 2.3e-07 58.5 31 90.3
Gohir.A11G082400 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.8e-07 57.8 31 87.1
Gorai.007G097100 Gossypium raimondii HOM05D000602 ORTHO05D002573 3.8e-07 57.8 31 87.1
BcaC04g24160 Brassica carinata HOM05D000602 ORTHO05D002573 8.6e-07 56.6 35 80.0
C09p00470 Brassica napus HOM05D002079 ORTHO05D002573 8.6e-07 56.6 35 80.0
Aa31LG5G420 Aethionema arabicum HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
AL6G52860 Arabidopsis lyrata HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
AT4G00570 Arabidopsis thaliana HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BcaB01g02259 Brassica carinata HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BcaC01g06869 Brassica carinata HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BcaNung05356 Brassica carinata HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
A03p32130 Brassica napus HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
A09p00420 Brassica napus HOM05D002079 ORTHO05D002573 1.9e-06 55.5 31 87.1
C03p39160 Brassica napus HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BolC3t16186H Brassica oleracea HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BolC9t52982H Brassica oleracea HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BraA03t12383Z Brassica rapa HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
BraA09t35719Z Brassica rapa HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Carub.0006s3665 Capsella rubella HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
CARHR248740 Cardamine hirsuta HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Cpa.g.sc18.186 Carica papaya HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Thhalv10028520m.g Eutrema salsugineum HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
FvH4_7g13590 Fragaria vesca HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
FAN06G1738 Fragaria x ananassa HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
FAN06G1931 Fragaria x ananassa HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
FAN10G2205 Fragaria x ananassa HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
FAN10G4318 Fragaria x ananassa HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Lj7A517G44 Lonicera japonica HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Lj9C579T5 Lonicera japonica HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
RcHm_v2.0_Chr1g0353381 Rosa chinensis HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Sp6g00610 Schrenkiella parvula HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
THA.LOC104801455 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
THA.LOC104817017 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
HPP92_002421 Vanilla planifolia HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
GSVIVG01026824001 Vitis vinifera HOM05D000602 ORTHO05D002573 1.9e-06 55.5 31 87.1
Aqoxy5G03954 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 2.5e-06 55.1 31 83.9
PSO478G4088 Papaver somniferum HOM05D000602 ORTHO05D002573 2.5e-06 55.1 31 83.9
PSO782G2006 Papaver somniferum HOM05D000602 ORTHO05D002573 2.5e-06 55.1 31 83.9
SEGI_19453 Sequoiadendron giganteum HOM05D000602 ORTHO05D002573 2.5e-06 55.1 31 83.9
Atru.chr5.443 Acer truncatum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Actinidia38308 Actinidia chinensis HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
ATR0680G410 Amborella trichopoda HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Aqoxy7G00370 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
arahy.Tifrunner.gnm1.ann1.Q65WP5 Arachis hypogaea HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
arahy.Tifrunner.gnm1.ann1.THTJ31 Arachis hypogaea HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
MSTRG.20809 Avicennia marina HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
CSS0037990 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
CANSAT56G0553 Cannabis sativa HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
CAN.G78.18 Capsicum annuum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Cfa003960 Carpinus fangiana HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
CiPaw.01G056400 Carya illinoinensis HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Cre06.g268750 Chlamydomonas reinhardtii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 77.4
Ca_07885_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
ClCG06G000010 Citrullus lanatus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Cc02_g37470 Coffea canephora HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
COL.COLO4_12663 Corchorus olitorius HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Haze_15462 Corylus avellana HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
MELO3C022537.2 Cucumis melo HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
CsaV3_6G005750 Cucumis sativus L. HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
DCAR_015950 Daucus carota HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.3e-06 54.7 31 83.9
Duzib133G0534 Durio zibethinus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Duzib138G1809 Durio zibethinus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Duzib268G0618 Durio zibethinus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
ECA236G4524 Erigeron canadensis HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Migut.B01710 Erythranthe guttata HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Eucgr.D02251 Eucalyptus grandis HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Glyma.09G262900 Glycine max HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Glyma.18G229300 Glycine max HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Gohir.A07G143500 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Gohir.D07G149300 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Gohir.D10G186500 Gossypium hirsutum HOM05D003089 ORTHO05D014076 3.3e-06 54.7 30 86.7
Gorai.001G170700 Gossypium raimondii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
HanXRQChr06g0169901 Helianthus annuus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Lalb_Chr10g0097281 Lupinus albus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Lalb_Chr17g0339901 Lupinus albus HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
MBI18_g09780_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
MD01G1052400 Malus domestica HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
MD07G1129000 Malus domestica HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Manes.01G260100 Manihot esculenta HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Manes.05G037900 Manihot esculenta HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Nn1g01428 Nelumbo nucifera HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Nitab4.5_0001251g0090 Nicotiana tabacum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Nitab4.5_0006669g0030 Nicotiana tabacum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Oeu014685.1 Olea europaea HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Peaxi162Scf00397g00526 Petunia axillaris HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Phvul.008G068700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Psat3g111680 Pisum sativum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Potri.002G156000 Populus trichocarpa HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Potri.014G079900 Populus trichocarpa HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Prupe.2G160000 Prunus persica HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
PGR031G1425 Punica granatum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
QL08p049812 Quercus lobata HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Rhsim07G0018800 Rhododendron simsii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Sabra14G0058100 Salix brachista HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Sed0013968 Sechium edule HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Sed0021943 Sechium edule HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Solyc01g094200.4 Solanum lycopersicum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Sopen01g038000 Solanum pennellii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
PGSC0003DMG401000020 Solanum tuberosum HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
SGA_v2.0_scaffold277G46677 Striga asiatica HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
Thecc.01G365100 Theobroma cacao HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
TPR.G22745 Trifolium pratense HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
TWI23G1023 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
TWI59G0725 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
TAR374G0975 Trochodendron aralioides HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
vmacro13318 Vaccinium macrocarpon HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
VMungo1383G3458 Vigna mungo HOM05D000602 ORTHO05D002573 3.3e-06 54.7 31 83.9
CDE04G1559 Ceratophyllum demersum HOM05D000602 ORTHO05D002573 4.2e-06 54.3 31 83.9
HanXRQChr04g0121671 Helianthus annuus HOM05D000602 ORTHO05D002573 4.2e-06 54.3 31 80.6
Lsat_1_v5_gn_7_5301 Lactuca sativa HOM05D000602 ORTHO05D002573 4.2e-06 54.3 31 80.6
Medtr7g076650 Medicago truncatula HOM05D000602 ORTHO05D002573 4.2e-06 54.3 31 80.6
Aa31LG8G11570 Aethionema arabicum HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Ah.05g176410 Amaranthus hybridus HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 83.9
ClCG05G002840 Citrullus lanatus HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
MELO3C006261.2 Cucumis melo HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
CsaV3_3G010370 Cucumis sativus L. HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Manes.05G059200 Manihot esculenta HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Mapoly0080s0072 Marchantia polymorpha HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Os07g0496200 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Pp3c11_26700 Physcomitrium patens HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Sed0025140 Sechium edule HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
THA.LOC104821820 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
HPP92_025667 Vanilla planifolia HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Zm00001eb321980 Zea mays HOM05D000602 ORTHO05D002573 5.5e-06 53.9 31 80.6
Ah.05g177580 Amaranthus hybridus HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
AL3G45400 Arabidopsis lyrata HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
AT2G13560 Arabidopsis thaliana HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
arahy.Tifrunner.gnm1.ann1.5R2T74 Arachis hypogaea HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
arahy.Tifrunner.gnm1.ann1.94RAPG Arachis hypogaea HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
arahy.Tifrunner.gnm1.ann1.HLUA2X Arachis hypogaea HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
arahy.Tifrunner.gnm1.ann1.I325BF Arachis hypogaea HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
arahy.Tifrunner.gnm1.ann1.WA2SL2 Arachis hypogaea HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
EL10Ac1g00523 Beta vulgaris HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
Carub.0003s2804 Capsella rubella HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
CARHR104820 Cardamine hirsuta HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
AUR62004314 Chenopodium quinoa HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
AUR62023443 Chenopodium quinoa HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
AUR62033330 Chenopodium quinoa HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
Lj3g0003921 Lotus japonicus HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 77.4
Os10g0503500 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
Hund16946 Selenicereus undatus HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
Sc23g0003100 Simmondsia chinensis HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
unitig_0.g1279 Utricularia gibba HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
Zm00001eb220780 Zea mays HOM05D000602 ORTHO05D002573 7.2e-06 53.5 31 80.6
arahy.Tifrunner.gnm1.ann1.4G7KVK Arachis hypogaea HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
arahy.Tifrunner.gnm1.ann1.NM7RU6 Arachis hypogaea HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
BcaB02g11521 Brassica carinata HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
BcaC04g23080 Brassica carinata HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
A09p10410 Brassica napus HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
C09p12350 Brassica napus HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
BolC9t54128H Brassica oleracea HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
BraA09t36686Z Brassica rapa HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
CSS0036160 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
CSS0038767 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Ca_23728_v3 Cicer arietinum L. HOM05D000602 ORTHO05D000002 9.5e-06 53.1 31 80.6
Ciclev10019380m.g Citrus clementina HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Thhalv10022600m.g Eutrema salsugineum HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
Glyma.03G014600 Glycine max HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Glyma.07G074700 Glycine max HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Lj3g0018490 Lotus japonicus HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Medtr8g032040 Medicago truncatula HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Phvul.010G094700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Psat4g152880 Pisum sativum HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Sabra02G0123900 Salix brachista HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
Sp3g26970 Schrenkiella parvula HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
SpUn0347_0010 Schrenkiella parvula HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 74.2
TPR.G9812 Trifolium pratense HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6
VMungo0331G0435 Vigna mungo HOM05D000602 ORTHO05D002573 9.5e-06 53.1 31 80.6


User provided reference genes

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