Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p24680 Brassica napus HOM05D002116 ORTHO05D042493 2.8e-38 161.4 76 100.0
BolC6t37623H Brassica oleracea HOM05D002116 ORTHO05D042493 1.5e-15 85.9 62 74.2
AL5G35800 Arabidopsis lyrata HOM05D002116 ORTHO05D002438 1.9e-10 68.9 38 73.7
AT3G54720 Arabidopsis thaliana HOM05D002116 ORTHO05D002438 1.9e-10 68.9 38 73.7
Carub.0005s2132 Capsella rubella HOM05D002116 ORTHO05D002438 1.9e-10 68.9 38 73.7
CARHR164640 Cardamine hirsuta HOM05D002116 ORTHO05D002438 7.1e-10 67.0 38 71.1
BcaC02g09699 Brassica carinata HOM05D002116 ORTHO05D002438 9.2e-10 66.6 43 62.8
C08p29860 Brassica napus HOM05D002116 ORTHO05D002438 1.2e-09 66.2 38 71.1
BcaB01g00165 Brassica carinata HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
BcaC07g39792 Brassica carinata HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
A04p05100 Brassica napus HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
A09p47650 Brassica napus HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
BolC4t25325H Brassica oleracea HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
BolC8t50597H Brassica oleracea HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
BraA09t40221Z Brassica rapa HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
Sp5g07730 Schrenkiella parvula HOM05D002116 ORTHO05D002438 1.6e-09 65.9 38 71.1
Aa31sc392G10 Aethionema arabicum HOM05D002116 ORTHO05D002438 2.1e-09 65.5 38 68.4
Thhalv10010161m.g Eutrema salsugineum HOM05D002116 ORTHO05D002438 2.7e-09 65.1 38 68.4
BcaC02g09047 Brassica carinata HOM05D002116 ORTHO05D002438 4.6e-09 64.3 38 68.4
BolC4t25355H Brassica oleracea HOM05D002116 ORTHO05D002438 4.6e-09 64.3 38 68.4
C04p37600 Brassica napus HOM05D002116 ORTHO05D002438 7.8e-09 63.5 38 68.4
BraA04t16221Z Brassica rapa HOM05D002116 ORTHO05D002438 7.8e-09 63.5 38 68.4
SGA_v2.0_scaffold392G50671 Striga asiatica HOM05D002116 ORTHO05D002438 7.8e-09 63.5 50 58.0
THA.LOC104825265 Tarenaya hassleriana HOM05D002116 ORTHO05D002438 1.0e-08 63.2 38 63.2
AUR62007762 Chenopodium quinoa HOM05D002116 ORTHO05D002438 5.1e-08 60.8 56 48.2
EL10Ac3g06276 Beta vulgaris HOM05D002116 ORTHO05D002438 6.6e-08 60.5 56 50.0
AUR62002957 Chenopodium quinoa HOM05D002116 ORTHO05D002438 6.6e-08 60.5 56 48.2
Sc22g0003020 Simmondsia chinensis HOM05D002116 ORTHO05D002438 8.7e-08 60.1 56 50.0
Sabra06G0152500 Salix brachista HOM05D002116 ORTHO05D002438 3.3e-07 58.2 29 79.3
Cc06_g07060 Coffea canephora HOM05D002116 ORTHO05D002438 4.3e-07 57.8 56 46.4
Aqoxy1G00573 Aquilegia oxysepala HOM05D002116 ORTHO05D002438 5.6e-07 57.4 56 44.6
Migut.L01857 Erythranthe guttata HOM05D002116 ORTHO05D002438 7.3e-07 57.0 56 46.4
Phvul.001G199600 Phaseolus vulgaris HOM05D002116 ORTHO05D002438 7.3e-07 57.0 56 46.4
unitig_85.g27222 Utricularia gibba HOM05D002116 ORTHO05D002438 7.3e-07 57.0 43 51.2
VMungo1383G0155 Vigna mungo HOM05D002116 ORTHO05D002438 7.3e-07 57.0 56 46.4
ECA238G4566 Erigeron canadensis HOM05D002116 ORTHO05D002438 9.6e-07 56.6 56 44.6
FvH4_6g21160 Fragaria vesca HOM05D002116 ORTHO05D002438 9.6e-07 56.6 38 63.2
FAN02G0379 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.6e-07 56.6 38 63.2
FAN05G1287 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.6e-07 56.6 38 63.2
FAN05G1646 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.6e-07 56.6 38 63.2
FAN14G3679 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.6e-07 56.6 38 63.2
Manes.08G038300 Manihot esculenta HOM05D002116 ORTHO05D002438 9.6e-07 56.6 38 63.2
Hund09746 Selenicereus undatus HOM05D002116 ORTHO05D002438 9.6e-07 56.6 56 48.2
Hund15033 Selenicereus undatus HOM05D002116 ORTHO05D002438 9.6e-07 56.6 56 48.2
TAR633G0184 Trochodendron aralioides HOM05D002116 ORTHO05D002438 9.6e-07 56.6 56 48.2
RcHm_v2.0_Chr3g0477621 Rosa chinensis HOM05D002116 ORTHO05D002438 1.2e-06 56.2 38 63.2
GSVIVG01022505001 Vitis vinifera HOM05D002116 ORTHO05D002438 1.2e-06 56.2 56 46.4
Actinidia03957 Actinidia chinensis HOM05D002116 ORTHO05D002438 1.6e-06 55.8 56 46.4
Actinidia26606 Actinidia chinensis HOM05D002116 ORTHO05D002438 1.6e-06 55.8 56 46.4
ATR0697G073 Amborella trichopoda HOM05D002116 ORTHO05D002438 1.6e-06 55.8 43 53.5
CDE10G0473 Ceratophyllum demersum HOM05D002116 ORTHO05D002438 1.6e-06 55.8 38 60.5
HanXRQChr07g0197011 Helianthus annuus HOM05D002116 ORTHO05D002438 1.6e-06 55.8 56 44.6
Lsat_1_v5_gn_2_102120 Lactuca sativa HOM05D002116 ORTHO05D002438 1.6e-06 55.8 38 57.9
Nn6g32464 Nelumbo nucifera HOM05D002116 ORTHO05D002438 1.6e-06 55.8 43 53.5
Phvul.007G264800 Phaseolus vulgaris HOM05D002116 ORTHO05D002438 1.6e-06 55.8 43 53.5
CAN.G13.11 Capsicum annuum HOM05D002116 ORTHO05D002438 2.1e-06 55.5 56 44.6
ClCG10G017890 Citrullus lanatus HOM05D002116 ORTHO05D002438 2.1e-06 55.5 43 51.2
MELO3C009584.2 Cucumis melo HOM05D002116 ORTHO05D002438 2.1e-06 55.5 43 51.2
CsaV3_3G038400 Cucumis sativus L. HOM05D002116 ORTHO05D002438 2.1e-06 55.5 43 51.2
Glyma.03G205900 Glycine max HOM05D002116 ORTHO05D002438 2.1e-06 55.5 56 44.6
Atru.chr8.1252 Acer truncatum HOM05D002116 ORTHO05D002438 2.8e-06 55.1 38 60.5
Glyma.19G203400 Glycine max HOM05D002116 ORTHO05D002438 2.8e-06 55.1 56 44.6
Gohir.A07G087800 Gossypium hirsutum HOM05D002116 ORTHO05D002438 2.8e-06 55.1 38 60.5
Gohir.D07G092700 Gossypium hirsutum HOM05D002116 ORTHO05D002438 2.8e-06 55.1 38 60.5
Gorai.001G099300 Gossypium raimondii HOM05D002116 ORTHO05D002438 2.8e-06 55.1 38 60.5
CDE10G1229 Ceratophyllum demersum HOM05D002116 ORTHO05D002438 3.6e-06 54.7 38 57.9
Pp3c8_14530 Physcomitrium patens HOM05D002116 ORTHO05D002438 3.6e-06 54.7 37 59.5
Pp3c8_14531 Physcomitrium patens HOM05D002116 ORTHO05D002438 3.6e-06 54.7 37 59.5
Potri.016G064300 Populus trichocarpa HOM05D002116 ORTHO05D002438 3.6e-06 54.7 38 60.5
Prupe.7G088100 Prunus persica HOM05D002116 ORTHO05D002438 3.6e-06 54.7 38 57.9
QL07p025891 Quercus lobata HOM05D002116 ORTHO05D002438 3.6e-06 54.7 38 60.5
Sed0000029 Sechium edule HOM05D002116 ORTHO05D002438 3.6e-06 54.7 36 61.1
vmacro07520 Vaccinium macrocarpon HOM05D002116 ORTHO05D002438 3.6e-06 54.7 50 50.0
vmacro07527 Vaccinium macrocarpon HOM05D002116 ORTHO05D002438 3.6e-06 54.7 50 50.0
GSVIVG01005992001 Vitis vinifera HOM05D002116 ORTHO05D002438 4.7e-06 54.3 56 44.6
GSVIVG01006056001 Vitis vinifera HOM05D002116 ORTHO05D002438 4.7e-06 54.3 56 44.6
GSVIVG01006347001 Vitis vinifera HOM05D002116 ORTHO05D002438 4.7e-06 54.3 56 44.6
CSS0001789 Camellia sinensis var. sinensis HOM05D002116 ORTHO05D002438 6.2e-06 53.9 38 60.5
CSS0027659 Camellia sinensis var. sinensis HOM05D002116 ORTHO05D002438 6.2e-06 53.9 38 60.5
Lj1C1060G1 Lonicera japonica HOM05D002116 ORTHO05D002438 6.2e-06 53.9 56 44.6
Nitab4.5_0005508g0010 Nicotiana tabacum HOM05D002116 ORTHO05D002438 6.2e-06 53.9 56 42.9
Rhsim03G0057700 Rhododendron simsii HOM05D002116 ORTHO05D002438 6.2e-06 53.9 56 42.9
Solyc11g045250.1 Solanum lycopersicum HOM05D002116 ORTHO05D002438 8.1e-06 53.5 56 42.9
Sopen11g020710 Solanum pennellii HOM05D002116 ORTHO05D002438 8.1e-06 53.5 56 42.9
TPR.G14416 Trifolium pratense HOM05D002116 ORTHO05D002438 8.1e-06 53.5 56 42.9


User provided reference genes

Program Settings