Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p21400 Brassica napus HOM05D008622 ORTHO05D010757 5.6e-43 177.2 88 100.0
BolSC37t60776H Brassica oleracea HOM05D008622 ORTHO05D010757 5.6e-43 177.2 88 100.0
BolSC45t60930H Brassica oleracea HOM05D008622 ORTHO05D010757 5.6e-43 177.2 88 100.0
BraSC25t45888Z Brassica rapa HOM05D008622 ORTHO05D010757 5.6e-43 177.2 88 100.0
BraSC59t46518Z Brassica rapa HOM05D008622 ORTHO05D010757 5.6e-43 177.2 88 100.0
Sed0001678 Sechium edule HOM05D008622 ORTHO05D010757 1.8e-33 145.6 83 83.1
Sed0011032 Sechium edule HOM05D008622 ORTHO05D010757 1.8e-33 145.6 83 83.1
Sed0018360 Sechium edule HOM05D008622 ORTHO05D010757 1.8e-33 145.6 83 83.1
CAN.G612.10 Capsicum annuum HOM05D008622 ORTHO05D010757 9.0e-33 143.3 88 80.7
PGR111G0016 Punica granatum HOM05D008622 ORTHO05D010757 9.0e-33 143.3 89 79.8
Gohir.1Z050166 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.5e-32 142.5 88 81.8
ATCG00050 Arabidopsis thaliana HOM05D008622 ORTHO05D010757 7.6e-32 140.2 79 88.6
LjContig00318g0003846 Lotus japonicus HOM05D008622 ORTHO05D010757 9.9e-32 139.8 79 83.5
Nn020s41492 Nelumbo nucifera HOM05D008622 ORTHO05D010757 9.9e-32 139.8 84 84.5
PSO548G0027 Papaver somniferum HOM05D008622 ORTHO05D010757 9.9e-32 139.8 89 80.9
CAN.G877.8 Capsicum annuum HOM05D008622 ORTHO05D010757 8.4e-31 136.7 88 78.4
CARHR281850 Cardamine hirsuta HOM05D008622 ORTHO05D010757 9.3e-30 133.3 68 92.6
Thhalv10028241m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 2.3e-28 128.6 65 95.4
Thhalv10001859m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 3.9e-28 127.9 64 95.3
DCAR_032466 Daucus carota HOM05D008622 ORTHO05D010757 5.6e-27 124.0 77 80.5
BolSC49t61205H Brassica oleracea HOM05D008622 ORTHO05D010757 2.8e-26 121.7 59 100.0
BolSC29t60522H Brassica oleracea HOM05D008622 ORTHO05D010757 8.2e-26 120.2 60 96.7
BolSC44t60843H Brassica oleracea HOM05D008622 ORTHO05D010757 3.1e-25 118.2 58 98.3
BolSC45t60884H Brassica oleracea HOM05D008622 ORTHO05D010757 3.1e-25 118.2 58 98.3
BolSC46t60979H Brassica oleracea HOM05D008622 ORTHO05D010757 3.1e-25 118.2 58 98.3
Gohir.D08G095680 Gossypium hirsutum HOM05D008622 ORTHO05D010757 5.3e-25 117.5 88 70.5
Peaxi162Scf00110g00044 Petunia axillaris HOM05D008622 ORTHO05D010757 9.0e-25 116.7 74 77.0
Gohir.A12G078500 Gossypium hirsutum HOM05D008622 ORTHO05D010757 2.0e-24 115.5 68 80.9
LjContig00489g0025793 Lotus japonicus HOM05D008622 ORTHO05D010757 4.9e-23 110.9 74 75.7
Gorai.001G180700 Gossypium raimondii HOM05D008622 ORTHO05D010757 6.5e-23 110.5 61 85.2
Glyma.16G088900 Glycine max HOM05D008622 ORTHO05D010757 1.1e-22 109.8 75 72.0
Glyma.15G248550 Glycine max HOM05D008622 ORTHO05D010757 4.2e-22 107.8 60 85.0
CiPaw.06G085000 Carya illinoinensis HOM05D008622 ORTHO05D010757 1.2e-21 106.3 68 76.5
MELO3C028501.2 Cucumis melo HOM05D008622 ORTHO05D010757 1.2e-21 106.3 59 84.7
HanXRQChr00c0496g0575161 Helianthus annuus HOM05D008622 ORTHO05D010757 1.3e-20 102.8 57 86.0
Gohir.D06G105260 Gossypium hirsutum HOM05D008622 ORTHO05D010757 2.3e-20 102.1 61 77.0
Gorai.012G044100 Gossypium raimondii HOM05D008622 ORTHO05D010757 6.7e-20 100.5 58 81.0
Migut.H01168 Erythranthe guttata HOM05D008622 ORTHO05D010757 6.3e-18 94.0 66 68.2
Gorai.003G055400 Gossypium raimondii HOM05D008622 ORTHO05D010757 2.2e-15 85.5 46 87.0
CiPaw.01G059700 Carya illinoinensis HOM05D008622 ORTHO05D010757 1.1e-14 83.2 60 68.3
Sed0025419 Sechium edule HOM05D008622 ORTHO05D010757 5.5e-14 80.9 81 53.1
MCO08G152 Micromonas commoda HOM05D003175 ORTHO05D010757 3.6e-13 78.2 74 52.7
Cre12.g494450 Chlamydomonas reinhardtii HOM05D003175 ORTHO05D010757 1.8e-12 75.9 73 50.7
Solyc02g011995.1 Solanum lycopersicum HOM05D008622 ORTHO05D010757 6.7e-12 73.9 52 67.3
Nitab4.5_0016174g0030 Nicotiana tabacum HOM05D001325 ORTHO05D001540 2.4e-09 65.5 59 57.6
ClCG00G002380 Citrullus lanatus HOM05D008622 ORTHO05D010757 3.1e-09 65.1 36 83.3
BraSC58t46475Z Brassica rapa HOM05D008622 ORTHO05D010757 6.9e-09 63.9 33 87.9
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 40.7
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 40.7
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 39.5
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 39.5
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 40.7
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 40.7
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 40.7
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 1.2e-08 63.2 86 40.7
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 2.0e-08 62.4 82 40.2
Nn4g25758 Nelumbo nucifera HOM05D008622 ORTHO05D010757 2.0e-08 62.4 39 71.8
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 2.6e-08 62.0 80 42.5
Nitab4.5_0004864g0050 Nicotiana tabacum HOM05D000540 ORTHO05D000681 4.5e-08 61.2 42 69.0
Pp3c11_14140 Physcomitrium patens HOM05D003175 ORTHO05D003591 5.9e-08 60.8 82 41.5
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 7.7e-08 60.5 81 42.0
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 7.7e-08 60.5 80 41.2
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 1.3e-07 59.7 87 36.8
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.7e-07 59.3 86 37.2
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 2.9e-07 58.5 82 40.2
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 3.8e-07 58.2 80 41.2
Pp3c2_38140 Physcomitrium patens HOM05D003175 ORTHO05D003591 5.0e-07 57.8 81 43.2
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 6.5e-07 57.4 84 36.9
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 8.5e-07 57.0 80 37.5
SMO119G0404 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 8.5e-07 57.0 82 41.5
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 1.4e-06 56.2 81 39.5
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 1.9e-06 55.8 81 37.0
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.5e-06 55.5 81 37.0
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 2.5e-06 55.5 81 37.0
Phvul.007G102300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 2.5e-06 55.5 81 38.3
Pp3c1_7830 Physcomitrium patens HOM05D003175 ORTHO05D003591 2.5e-06 55.5 82 39.0
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 2.5e-06 55.5 81 35.8
SMO128G0011 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 2.5e-06 55.5 79 40.5
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.2e-06 55.1 81 37.0
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 3.2e-06 55.1 81 40.7
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 3.2e-06 55.1 81 35.8
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 3.2e-06 55.1 81 37.0
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 3.2e-06 55.1 81 37.0
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 3.2e-06 55.1 80 38.8
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 3.2e-06 55.1 81 37.0
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 35.8
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 35.8
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 37.0
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 37.0
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 37.0
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 37.0
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 4.2e-06 54.7 80 37.5
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 35.8
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 35.8
VMungo0720G1923 Vigna mungo HOM05D003175 ORTHO05D003591 4.2e-06 54.7 81 37.0
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Cc06_g11550 Coffea canephora HOM05D003175 ORTHO05D003591 5.5e-06 54.3 80 36.2
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 35.8
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 35.8
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
PRCOL_00003143 Prasinoderma coloniale HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 35.8
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 5.5e-06 54.3 81 37.0
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 35.8
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 35.8
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
Lsat_1_v5_gn_5_142921 Lactuca sativa HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 34.6
Os08g0517900 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 38.3
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 37.0
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 34.6
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 7.2e-06 53.9 81 34.6
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 37.0
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 37.0
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 37.0
Glyma.10G204500 Glycine max HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 35.8
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 35.8
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 35.8
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 35.8
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 35.8
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 9.4e-06 53.5 81 35.8
Mapoly0011s0195 Marchantia polymorpha HOM05D003175 ORTHO05D003591 9.4e-06 53.5 80 40.0


User provided reference genes

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