Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 6.9e-176 620.5 315 100.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.3e-171 606.3 315 98.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 4.8e-169 597.8 315 95.9
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.2e-167 593.2 315 95.2
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.1e-157 560.1 316 91.1
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.2e-133 478.4 327 77.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.3e-130 468.8 321 78.2
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.9e-126 455.7 271 84.5
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.0e-118 430.6 288 76.7
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 7.2e-117 424.5 288 76.7
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 9.5e-117 424.1 291 75.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 8.8e-115 417.5 307 72.3
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 9.5e-109 397.5 285 75.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 3.6e-100 369.0 289 68.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 9.2e-96 354.4 307 63.8
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 2.8e-92 342.8 284 62.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 9.2e-80 301.2 284 55.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.2e-79 300.8 284 55.3
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-77 294.3 248 56.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 4.3e-77 292.4 248 56.0
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 7.3e-77 291.6 289 51.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.6e-76 290.4 288 54.5
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.8e-76 289.7 250 57.2
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 4.7e-76 288.9 285 51.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.7e-76 288.9 273 52.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.4e-75 286.6 285 51.2
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.0e-75 285.8 296 52.0
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.0e-75 285.8 268 52.6
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 5.2e-75 285.4 251 55.0
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.2e-75 285.4 288 52.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.5e-74 283.9 267 53.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 5.8e-74 282.0 277 51.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.8e-74 282.0 289 50.9
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 9.9e-74 281.2 278 50.4
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.2e-73 280.0 279 50.9
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.8e-73 279.3 276 51.4
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.9e-73 278.9 281 50.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-72 277.7 288 49.7
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.4e-72 277.3 285 51.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.9e-72 276.9 274 51.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.2e-72 276.2 289 48.8
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.2e-72 275.8 277 49.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 4.2e-72 275.8 277 52.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 7.1e-72 275.0 277 48.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.2e-71 274.2 266 50.8
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.2e-71 274.2 293 49.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.5e-71 272.7 273 48.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.0e-71 271.9 273 48.7
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.8e-71 271.6 279 50.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 8.7e-70 268.1 289 48.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 8.7e-70 268.1 250 52.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.5e-69 267.3 291 48.5
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.5e-69 267.3 293 45.4
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.5e-69 267.3 248 52.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.3e-69 266.2 272 50.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 4.3e-69 265.8 278 51.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 5.6e-69 265.4 291 46.4
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.3e-68 264.2 281 48.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 8.1e-68 261.5 278 50.0
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.1e-67 261.2 261 49.4
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.8e-67 260.4 257 50.2
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.0e-67 259.2 292 48.3
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 9.0e-67 258.1 273 48.4
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.0e-66 256.9 266 49.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 7.6e-66 255.0 277 46.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 9.9e-66 254.6 248 48.8
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.7e-65 253.8 279 45.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.2e-65 253.4 261 46.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.9e-65 253.1 255 50.6
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 3.8e-65 252.7 290 48.6
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.4e-65 251.9 258 49.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.4e-64 250.8 294 44.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.9e-64 250.4 248 51.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.4e-64 250.0 246 48.0
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 7.1e-64 248.4 248 50.8
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.2e-63 247.7 236 51.7
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-63 246.9 246 48.0
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.7e-63 246.5 253 47.8
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.7e-63 246.5 264 47.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.0e-63 245.4 295 43.1
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.3e-62 244.2 284 44.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.8e-62 243.8 292 43.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.0e-62 243.0 286 46.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.1e-62 242.3 257 51.0
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 5.1e-62 242.3 302 43.4
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.1e-61 241.1 274 47.8
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.3e-61 239.2 294 44.6
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.3e-61 239.2 317 42.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.3e-60 237.7 276 42.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-60 237.3 252 50.8
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.1e-60 236.9 312 39.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.1e-60 236.9 312 39.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 6.2e-60 235.3 284 43.3
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.4e-59 234.2 284 43.3
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.1e-59 233.0 252 49.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 9.0e-59 231.5 190 57.9
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 9.0e-59 231.5 414 34.8
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.2e-58 231.1 283 46.3
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.4e-58 229.6 291 45.4
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.5e-58 229.2 251 48.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 7.6e-58 228.4 252 48.4
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.6e-58 228.4 252 48.4
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-57 227.6 289 44.6
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 8.4e-57 224.9 208 53.8
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.2e-56 222.6 284 43.7
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.9e-55 218.4 342 38.9
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 8.7e-54 214.9 292 42.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.5e-53 213.4 335 36.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 3.3e-53 213.0 285 39.3
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.0e-46 189.9 173 52.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-45 187.6 215 43.7
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 7.4e-45 185.3 296 37.8
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.8e-44 183.3 173 51.4
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-43 181.4 201 48.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.1e-43 179.9 245 39.6
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 5.3e-43 179.1 239 43.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.6e-42 176.8 206 42.2
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.9e-39 165.2 166 56.6
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.9e-39 165.2 140 56.4
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 8.2e-36 155.2 148 56.8
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.0e-33 146.0 238 37.8
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 6.5e-33 145.6 102 74.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.5e-33 145.6 180 46.1
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 5.5e-32 142.5 326 28.5
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 6.1e-31 139.0 294 32.7
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.0e-30 138.3 148 53.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.8e-30 137.5 179 40.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.3e-30 137.1 148 52.7
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.3e-30 137.1 247 33.2
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 6.7e-30 135.6 108 59.3
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-29 133.7 122 55.7
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.3e-28 131.3 124 60.5
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 1.7e-28 131.0 108 71.3
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-27 127.9 174 40.2
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.5e-26 124.4 183 36.6
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 4.5e-26 122.9 245 31.0
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.4e-24 117.9 286 30.8
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.5e-24 117.1 126 46.0
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.5e-24 117.1 137 39.4
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.2e-24 116.3 161 39.1
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 5.5e-24 115.9 236 29.2
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.5e-24 115.9 419 24.6
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.2e-24 115.5 85 68.2
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 9.4e-24 115.2 96 71.9
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 9.4e-24 115.2 96 71.9
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.5e-21 107.8 134 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 9.7e-21 105.1 250 28.8
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.1e-19 99.8 63 77.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.8e-17 93.2 169 34.9
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.5e-17 92.4 64 70.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.2e-16 90.1 193 32.6
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.5e-16 89.4 241 28.2
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.7e-15 87.0 263 29.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.3e-14 84.0 61 62.3
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.0e-13 80.9 207 27.5
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.7e-12 76.6 60 66.7
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 2.0e-10 70.9 57 61.4
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.0e-09 68.6 108 37.0
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 4.7e-07 59.7 65 49.2
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 6.1e-07 59.3 120 32.5


User provided reference genes

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