Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 1.4e-109 401.4 678 100.0
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 1.4e-109 401.4 678 100.0
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 1.4e-109 401.4 678 100.0
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 1.2e-97 361.7 679 97.2
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 1.2e-95 355.1 679 96.9
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 8.1e-89 332.4 680 94.9
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 6.0e-84 316.2 681 92.8
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 6.0e-84 316.2 680 93.5
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 5.6e-82 309.7 680 94.1
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 2.8e-81 307.4 679 94.1
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 1.5e-79 301.6 685 92.0
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 1.9e-69 268.1 681 91.0
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 4.6e-68 263.5 680 89.6
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 4.2e-61 240.4 681 86.6
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 3.9e-51 207.2 568 81.9
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 2.8e-49 201.1 177 61.6
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 4.8e-49 200.3 191 58.6
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 3.1e-48 197.6 191 59.7
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 5.3e-48 196.8 193 59.1
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 1.5e-47 195.3 191 57.1
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 1.5e-47 195.3 565 82.8
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 1.0e-46 192.6 191 57.6
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 1.3e-46 192.2 185 58.4
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 1.9e-45 188.3 193 58.0
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 2.1e-44 184.9 195 57.9
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 7.9e-44 183.0 184 61.4
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 1.8e-43 181.8 162 63.6
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 2.3e-43 181.4 192 57.8
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 1.1e-42 179.1 183 55.2
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 1.1e-42 179.1 158 59.5
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 1.1e-42 179.1 192 55.7
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 1.5e-42 178.7 189 56.1
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 1.9e-42 178.3 189 55.6
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 7.4e-42 176.4 192 57.8
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 1.3e-41 175.6 188 54.3
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 2.8e-41 174.5 146 65.1
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 3.7e-41 174.1 147 62.6
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 3.7e-41 174.1 179 55.3
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 6.3e-41 173.3 147 61.2
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 6.3e-41 173.3 188 54.3
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 6.3e-41 173.3 188 54.3
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 6.3e-41 173.3 181 58.0
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 1.1e-40 172.6 185 56.8
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 1.1e-40 172.6 149 63.1
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 1.1e-40 172.6 188 55.9
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 1.4e-40 172.2 149 63.8
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 1.4e-40 172.2 198 53.0
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 1.8e-40 171.8 162 58.0
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 3.1e-40 171.0 193 53.4
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 3.1e-40 171.0 189 52.4
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 4.1e-40 170.6 188 52.7
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 4.1e-40 170.6 181 54.7
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 4.1e-40 170.6 181 54.1
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 4.1e-40 170.6 181 54.1
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 4.1e-40 170.6 185 55.1
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 5.3e-40 170.2 184 54.3
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 6.9e-40 169.9 106 76.4
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 9.0e-40 169.5 191 52.9
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.3e-38 165.6 189 52.4
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.3e-38 165.6 189 52.4
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 1.7e-38 165.2 187 53.5
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 1.7e-38 165.2 177 56.5
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 1.7e-38 165.2 123 68.3
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 2.2e-38 164.9 134 62.7
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 2.9e-38 164.5 99 81.8
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 5.0e-38 163.7 188 52.1
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 6.5e-38 163.3 186 53.2
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 1.4e-37 162.2 138 60.1
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 1.9e-37 161.8 179 54.7
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 5.5e-37 160.2 158 57.0
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 9.3e-37 159.5 158 54.4
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 2.1e-36 158.3 104 75.0
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 2.1e-36 158.3 521 79.3
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 2.7e-36 157.9 99 77.8
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 2.3e-35 154.8 106 69.8
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 3.0e-35 154.5 177 52.5
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 1.5e-34 152.1 144 56.9
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 2.5e-34 151.4 190 49.5
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 4.3e-34 150.6 99 74.7
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 1.7e-33 148.7 215 44.2
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 4.8e-33 147.1 109 64.2
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 8.2e-33 146.4 163 54.0
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 3.1e-32 144.4 157 49.7
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 9.1e-32 142.9 153 50.3
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 9.1e-32 142.9 153 50.3
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 1.5e-31 142.1 93 74.2
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 1.5e-26 125.6 67 86.6
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 1.4e-24 119.0 67 82.1
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 1.8e-24 118.6 149 47.7
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 4.5e-23 114.0 67 77.6
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.7e-22 112.1 62 82.3
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 9.4e-21 106.3 67 76.1
Pp3c3_5760 Physcomitrium patens HOM05D007405 ORTHO05D009256 1.8e-19 102.1 100 45.0
Pp3c3_5764 Physcomitrium patens HOM05D007405 ORTHO05D009256 1.8e-19 102.1 100 45.0
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 8.8e-19 99.8 135 42.2
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 1.7e-17 95.5 105 51.4
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 1.4e-16 92.4 52 80.8
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 2.4e-16 91.7 98 46.9
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 2.0e-15 88.6 67 59.7
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 3.5e-15 87.8 148 38.5
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 1.1e-13 82.8 67 53.7
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 2.7e-12 78.2 59 57.6
FAN02G2814 Fragaria x ananassa HOM05D007405 ORTHO05D009256 5.7e-10 70.5 36 88.9
Actinidia06062 Actinidia chinensis HOM05D007405 ORTHO05D009256 4.8e-09 67.4 70 58.6
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 4.1e-08 64.3 44 79.5


User provided reference genes

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