Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-40 167.9 84 100.0
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.7e-31 137.5 93 77.4
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 6.2e-31 137.1 93 76.3
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 6.2e-31 137.1 93 76.3
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 8.0e-31 136.7 93 76.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 8.0e-31 136.7 93 76.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-30 136.3 93 76.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.2e-29 132.9 93 74.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.7e-28 127.9 93 74.2
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.1e-27 124.4 88 75.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.7e-26 121.7 87 73.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.0e-25 117.5 87 73.6
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.9e-24 115.5 88 70.5
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 9.5e-24 113.2 62 90.3
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.2e-21 106.3 85 64.7
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 2.0e-21 105.5 54 96.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.4e-21 104.4 87 62.1
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.3e-20 102.8 83 65.1
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.2e-20 102.1 86 61.6
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.2e-20 102.1 86 61.6
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.2e-20 102.1 86 62.8
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.7e-20 101.3 86 60.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 6.4e-20 100.5 86 60.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 6.4e-20 100.5 86 60.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.4e-19 99.4 86 61.6
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-19 99.4 86 60.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 2.4e-19 98.6 86 60.5
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.4e-19 98.6 83 60.2
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.1e-19 97.8 72 61.1
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.1e-19 97.8 72 61.1
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 5.4e-19 97.4 86 59.3
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 7.1e-19 97.1 88 59.1
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 9.2e-19 96.7 83 61.4
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.7e-18 95.1 85 56.5
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 2.7e-18 95.1 83 60.2
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.7e-18 95.1 81 63.0
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 3.5e-18 94.7 86 58.1
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 3.5e-18 94.7 83 59.0
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.5e-18 94.7 83 59.0
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 4.6e-18 94.4 83 57.8
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 4.6e-18 94.4 83 57.8
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.0e-18 94.0 86 57.0
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.0e-17 93.2 84 58.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.7e-17 92.4 83 57.8
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 3.0e-17 91.7 83 55.4
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.9e-17 91.3 85 57.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 3.9e-17 91.3 83 59.0
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.9e-17 91.3 82 56.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.9e-17 91.3 83 56.6
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.9e-17 91.3 83 56.6
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 5.1e-17 90.9 83 55.4
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.5e-16 89.4 83 56.6
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.9e-16 89.0 83 56.6
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.9e-16 89.0 79 59.5
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 3.3e-16 88.2 82 57.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.3e-16 87.8 83 55.4
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.3e-16 87.8 83 53.0
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 4.3e-16 87.8 72 56.9
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.6e-16 87.4 82 54.9
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 5.6e-16 87.4 82 54.9
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 9.5e-16 86.7 83 55.4
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.1e-15 85.5 83 55.4
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 2.1e-15 85.5 83 56.6
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.6e-15 84.7 86 51.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.6e-15 84.7 83 54.2
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.6e-15 84.7 83 54.2
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 4.7e-15 84.3 85 51.8
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-15 84.3 83 53.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-15 84.3 83 54.2
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-15 84.3 82 54.9
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.2e-15 84.0 95 47.4
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 6.2e-15 84.0 83 51.8
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 8.1e-15 83.6 83 51.8
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.1e-15 83.6 83 53.0
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.1e-14 81.6 80 55.0
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.0e-14 81.3 83 49.4
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.0e-14 81.3 83 49.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 5.2e-14 80.9 83 53.0
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 6.8e-14 80.5 83 51.8
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.5e-13 79.3 56 69.6
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.8e-13 77.4 88 47.7
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 9.9e-13 76.6 88 44.3
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 6.4e-12 73.9 82 42.7
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.1e-11 73.2 88 43.2
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.1e-11 73.2 82 47.6
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.4e-11 72.0 83 43.4
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 5.4e-11 70.9 81 40.7
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 5.4e-11 70.9 79 49.4
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 7.1e-11 70.5 80 50.0
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.5e-10 68.2 81 39.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.0e-10 67.4 56 57.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.0e-10 67.4 81 38.3
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 6.0e-10 67.4 86 38.4
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 3.0e-09 65.1 88 38.6
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 3.9e-09 64.7 79 41.8
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 5.1e-09 64.3 83 38.6
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 8.7e-09 63.5 82 41.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.1e-08 63.2 96 38.5
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.5e-08 62.8 81 38.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.5e-08 62.8 82 39.0
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.5e-08 62.8 81 43.2
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.9e-08 62.4 79 39.2
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.9e-08 62.4 80 40.0
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.9e-08 62.4 82 37.8
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 9.6e-08 60.1 60 46.7
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 9.6e-08 60.1 81 38.3
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.6e-07 59.3 82 35.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.6e-07 59.3 84 38.1
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.6e-07 59.3 84 38.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.6e-07 58.2 79 41.8
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.7e-07 57.8 79 41.8
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 6.2e-07 57.4 79 35.4
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 6.2e-07 57.4 79 35.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 6.2e-07 57.4 92 34.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 8.1e-07 57.0 79 35.4
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.1e-06 56.6 79 40.5
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.8e-06 55.8 82 31.7
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.4e-06 55.5 65 41.5
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 4.0e-06 54.7 56 44.6
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.0e-06 54.7 90 31.1


User provided reference genes

Program Settings