Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p17290 Brassica napus HOM05D014987 ORTHO05D019987 4.1e-23 110.5 56 100.0
BcaC08g44304 Brassica carinata HOM05D014987 ORTHO05D019987 1.6e-22 108.6 55 98.2
BolC6t36926H Brassica oleracea HOM05D014987 ORTHO05D019987 1.6e-22 108.6 55 98.2
BcaC09g48155 Brassica carinata HOM05D000815 ORTHO05D000636 1.4e-18 95.5 50 94.0
BcaB04g21150 Brassica carinata HOM05D000815 ORTHO05D000636 4.0e-18 94.0 50 92.0
BolC1t05335H Brassica oleracea HOM05D000815 ORTHO05D000636 1.2e-17 92.4 50 92.0
BcaC09g48152 Brassica carinata HOM05D014987 ORTHO05D000636 1.5e-17 92.0 50 90.0
BraA01t04200Z Brassica rapa HOM05D000815 ORTHO05D000636 2.0e-17 91.7 50 88.0
Sp3g09420 Schrenkiella parvula HOM05D000815 ORTHO05D000636 4.1e-15 84.0 50 90.0
Thhalv10021383m.g Eutrema salsugineum HOM05D000815 ORTHO05D000636 5.4e-15 83.6 50 88.0
BcaC07g37459 Brassica carinata HOM05D014987 ORTHO05D000636 9.2e-15 82.8 49 83.7
A05p38170 Brassica napus HOM05D000815 ORTHO05D000636 3.5e-14 80.9 52 84.6
BraA05t22610Z Brassica rapa HOM05D000815 ORTHO05D000636 3.5e-14 80.9 52 84.6
C08p09330 Brassica napus HOM05D014987 ORTHO05D000636 4.6e-14 80.5 49 81.6
C09p41120 Brassica napus HOM05D014987 ORTHO05D019987 2.3e-13 78.2 50 76.0
BolC9t56990H Brassica oleracea HOM05D014987 ORTHO05D019987 2.3e-13 78.2 50 76.0
C05p56980 Brassica napus HOM05D000815 ORTHO05D000636 3.0e-13 77.8 52 82.7
BolC5t34361H Brassica oleracea HOM05D000815 ORTHO05D000636 3.0e-13 77.8 52 82.7
Aa31LG11G6610 Aethionema arabicum HOM05D000815 ORTHO05D000636 6.6e-13 76.6 50 82.0
CARHR085680 Cardamine hirsuta HOM05D000815 ORTHO05D000636 1.5e-12 75.5 50 80.0
Carub.0003s1039 Capsella rubella HOM05D000815 ORTHO05D000636 2.5e-12 74.7 50 80.0
AL3G22640 Arabidopsis lyrata HOM05D000815 ORTHO05D000636 5.6e-12 73.6 50 78.0
BcaC05g29401 Brassica carinata HOM05D000815 ORTHO05D000636 1.6e-11 72.0 46 82.6
CARHR153390 Cardamine hirsuta HOM05D014987 ORTHO05D019987 1.6e-11 72.0 50 76.0
AT5G05550 Arabidopsis thaliana HOM05D000815 ORTHO05D000636 2.8e-11 71.2 50 78.0
Aa31LG3G4250 Aethionema arabicum HOM05D000815 ORTHO05D000636 3.6e-11 70.9 50 76.0
AL6G15440 Arabidopsis lyrata HOM05D000815 ORTHO05D000636 4.7e-11 70.5 50 76.0
AT3G11100 Arabidopsis thaliana HOM05D000815 ORTHO05D000636 4.7e-11 70.5 50 76.0
Sp6g37320 Schrenkiella parvula HOM05D000815 ORTHO05D000636 6.2e-11 70.1 50 74.0
Carub.0006s0445 Capsella rubella HOM05D000815 ORTHO05D000636 6.8e-10 66.6 48 72.9
Manes.07G132100 Manihot esculenta HOM05D000815 ORTHO05D000636 6.8e-10 66.6 48 70.8
Potri.008G071300 Populus trichocarpa HOM05D000815 ORTHO05D000636 6.8e-10 66.6 48 72.9
THA.LOC104816538 Tarenaya hassleriana HOM05D000815 ORTHO05D000636 6.8e-10 66.6 47 76.6
Sabra08G0052600 Salix brachista HOM05D000815 ORTHO05D000636 1.5e-09 65.5 48 70.8
C09p71230 Brassica napus HOM05D000815 ORTHO05D000636 2.0e-09 65.1 50 70.0
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 3.4e-09 64.3 48 68.8
A10p30740 Brassica napus HOM05D000815 ORTHO05D000636 4.4e-09 63.9 53 66.0
BolC9t59884H Brassica oleracea HOM05D000815 ORTHO05D000636 4.4e-09 63.9 50 68.0
Duzib106G1636 Durio zibethinus HOM05D000815 ORTHO05D000636 4.4e-09 63.9 48 70.8
Thecc.10G013000 Theobroma cacao HOM05D000815 ORTHO05D000636 4.4e-09 63.9 48 70.8
QL08p063514 Quercus lobata HOM05D000815 ORTHO05D000636 9.8e-09 62.8 48 68.8
CANSAT56G1533 Cannabis sativa HOM05D000815 ORTHO05D000636 1.7e-08 62.0 48 68.8
Haze_17253 Corylus avellana HOM05D000815 ORTHO05D000636 1.7e-08 62.0 48 66.7
Cpa.g.sc19.152 Carica papaya HOM05D000815 ORTHO05D000636 3.7e-08 60.8 48 68.8
TWI53G0673 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 4.9e-08 60.5 49 63.3
CiPaw.02G194300 Carya illinoinensis HOM05D000815 ORTHO05D000636 6.4e-08 60.1 48 64.6
GSVIVG01030322001 Vitis vinifera HOM05D000815 ORTHO05D000636 6.4e-08 60.1 52 59.6
CSS0007740 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 1.4e-07 58.9 50 62.0
Potri.010G186200 Populus trichocarpa HOM05D000815 ORTHO05D000636 1.4e-07 58.9 48 66.7
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 1.4e-07 58.9 53 62.3
RcHm_v2.0_Chr1g0370671 Rosa chinensis HOM05D000815 ORTHO05D000636 1.4e-07 58.9 49 61.2
FAN03G1260 Fragaria x ananassa HOM05D000815 ORTHO05D000636 3.2e-07 57.8 50 60.0
FAN10G0549 Fragaria x ananassa HOM05D000815 ORTHO05D000636 3.2e-07 57.8 49 61.2
CARHR207710 Cardamine hirsuta HOM05D000815 ORTHO05D000636 4.1e-07 57.4 45 68.9
Rhsim09G0179000 Rhododendron simsii HOM05D000815 ORTHO05D000636 4.1e-07 57.4 48 66.7
CDE10G0137 Ceratophyllum demersum HOM05D000815 ORTHO05D000636 7.0e-07 56.6 39 66.7
Oeu053230.1 Olea europaea HOM05D000815 ORTHO05D000636 7.0e-07 56.6 49 59.2
Actinidia00668 Actinidia chinensis HOM05D000815 ORTHO05D000636 1.2e-06 55.8 50 60.0
Oeu058993.2 Olea europaea HOM05D000815 ORTHO05D000636 1.2e-06 55.8 49 57.1
TAR623G1576 Trochodendron aralioides HOM05D000815 ORTHO05D000636 1.2e-06 55.8 49 59.2
FvH4_7g24800 Fragaria vesca HOM05D000815 ORTHO05D000636 1.6e-06 55.5 39 69.2
FAN01G2247 Fragaria x ananassa HOM05D000815 ORTHO05D000636 1.6e-06 55.5 39 69.2
FAN06G1167 Fragaria x ananassa HOM05D000815 ORTHO05D000636 1.6e-06 55.5 39 69.2
TAR369G0236 Trochodendron aralioides HOM05D000815 ORTHO05D000636 1.6e-06 55.5 49 57.1
CSS0040066 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 2.1e-06 55.1 39 74.4
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 2.1e-06 55.1 53 56.6
MBI15_g43057_MAGBIO Magnolia biondii HOM05D000815 ORTHO05D000636 2.7e-06 54.7 44 63.6
Aqoxy4G00340 Aquilegia oxysepala HOM05D000815 ORTHO05D000636 4.6e-06 53.9 49 55.1
CDE10G0436 Ceratophyllum demersum HOM05D000815 ORTHO05D000636 4.6e-06 53.9 43 60.5
MD01G1155800 Malus domestica HOM05D000815 ORTHO05D000636 4.6e-06 53.9 37 70.3
Nn1g09121 Nelumbo nucifera HOM05D000815 ORTHO05D000636 4.6e-06 53.9 39 66.7
PSO017G3864 Papaver somniferum HOM05D000815 ORTHO05D000636 6.0e-06 53.5 43 60.5
Haze_13375 Corylus avellana HOM05D000815 ORTHO05D000636 7.8e-06 53.1 43 69.8
Dinv21754 Davidia involucrata HOM05D000815 ORTHO05D000636 7.8e-06 53.1 48 60.4
vmacro10027 Vaccinium macrocarpon HOM05D000815 ORTHO05D000636 7.8e-06 53.1 47 63.8


User provided reference genes

Program Settings