Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.1e-81 306.6 157 100.0
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-75 286.6 154 95.5
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 6.4e-74 280.8 154 94.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 9.6e-70 266.9 156 87.8
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.1e-69 265.8 156 87.2
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.1e-69 265.8 156 87.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 4.8e-69 264.6 156 86.5
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 4.8e-69 264.6 156 86.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.1e-68 263.5 156 85.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 6.9e-68 260.8 151 87.4
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 6.9e-68 260.8 151 87.4
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.0e-66 256.9 151 88.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.1e-65 250.8 142 88.0
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.1e-65 250.8 142 88.0
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.5e-64 248.4 142 87.3
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 6.0e-64 247.7 138 89.1
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.0e-64 247.7 138 89.1
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.5e-62 242.3 140 83.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.7e-61 238.4 142 83.8
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 6.3e-61 237.7 153 79.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.1e-60 236.9 142 83.1
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.1e-60 235.3 153 77.8
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 4.1e-60 235.0 151 78.8
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 4.1e-60 235.0 142 81.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.9e-60 234.2 153 77.8
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 9.0e-60 233.8 153 77.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.2e-59 233.4 153 77.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.2e-59 233.4 153 77.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 2.0e-59 232.6 153 77.1
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.5e-59 231.5 153 77.1
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.9e-59 231.1 143 79.7
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.0e-58 230.3 153 78.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.0e-58 230.3 153 78.4
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.3e-58 229.9 143 78.3
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.7e-58 229.6 142 78.2
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.7e-58 229.6 153 77.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 2.2e-58 229.2 140 81.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 3.8e-58 228.4 153 78.4
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 6.5e-58 227.6 153 76.5
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.5e-58 227.6 153 76.5
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.5e-58 227.6 151 74.8
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.5e-58 227.6 153 77.8
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 6.5e-58 227.6 153 74.5
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.5e-58 227.3 153 76.5
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.1e-57 226.9 156 75.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.1e-57 226.9 145 77.9
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-57 226.9 155 74.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.1e-57 226.9 152 77.0
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.1e-57 226.9 147 79.6
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.4e-57 226.5 142 78.2
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.4e-57 226.5 152 75.7
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.9e-57 226.1 153 75.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.9e-57 226.1 144 78.5
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.9e-57 226.1 151 74.8
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 3.2e-57 225.3 145 78.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.2e-57 225.3 152 75.7
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 4.2e-57 224.9 148 75.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.5e-57 224.6 153 75.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.5e-57 224.6 153 77.1
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 5.5e-57 224.6 146 78.8
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.5e-57 224.6 143 77.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.2e-57 224.2 153 73.9
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 7.2e-57 224.2 157 72.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 7.2e-57 224.2 157 75.2
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.2e-56 223.4 153 75.2
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-56 223.4 154 74.7
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.6e-56 223.0 148 72.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.6e-56 223.0 153 76.5
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.1e-56 222.6 143 79.0
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.1e-56 222.6 153 73.9
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.7e-56 222.2 154 73.4
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.7e-56 222.2 151 75.5
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.7e-56 222.2 151 75.5
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 3.6e-56 221.9 150 74.7
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.6e-56 221.9 147 74.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 4.6e-56 221.5 153 73.9
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 4.6e-56 221.5 153 73.9
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 6.1e-56 221.1 152 75.7
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.1e-56 221.1 145 75.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 6.1e-56 221.1 152 75.7
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 6.1e-56 221.1 156 72.4
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 7.9e-56 220.7 148 73.6
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 7.9e-56 220.7 153 73.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 7.9e-56 220.7 153 73.9
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 7.9e-56 220.7 150 73.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.0e-55 220.3 131 83.2
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.3e-55 219.9 151 74.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.3e-55 219.9 141 80.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-55 219.2 153 73.2
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.3e-55 219.2 144 75.7
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.3e-55 219.2 144 75.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.3e-55 219.2 156 71.8
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.3e-55 219.2 134 81.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.0e-55 218.8 140 77.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.0e-55 218.8 148 70.9
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.0e-55 218.8 154 72.1
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.1e-55 218.0 151 73.5
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.7e-55 217.6 157 70.7
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.7e-55 217.6 157 70.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 6.7e-55 217.6 152 72.4
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.5e-54 215.7 144 72.9
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 5.7e-54 214.5 157 71.3
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 7.4e-54 214.2 146 69.9
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 9.7e-54 213.8 151 70.9
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.6e-53 213.0 153 71.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.2e-53 212.6 137 76.6
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.2e-53 212.6 154 73.4
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.2e-53 212.6 146 71.9
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.7e-53 211.8 151 69.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.7e-53 211.8 148 71.6
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.8e-53 211.5 154 69.5
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.1e-52 210.3 154 69.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.4e-52 209.9 162 67.3
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.4e-52 209.9 162 67.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.8e-52 209.5 126 79.4
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 4.1e-52 208.4 152 68.4
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-51 206.1 152 69.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 3.4e-51 205.3 151 70.9
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 4.5e-51 204.9 151 70.9
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.7e-50 203.0 151 68.2
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.9e-50 202.2 150 68.7
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 5.0e-50 201.4 142 69.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 8.5e-50 200.7 159 66.7
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.9e-49 199.5 130 77.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 2.5e-49 199.1 148 68.9
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 9.4e-49 197.2 139 70.5
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 8.8e-47 190.7 119 76.5
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.7e-45 186.4 159 62.9
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 3.7e-45 185.3 122 76.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 4.8e-45 184.9 145 63.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.1e-44 183.7 145 62.8
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.8e-44 183.0 223 48.0
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.2e-43 180.3 143 60.1
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.3e-42 176.8 153 59.5
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.2e-42 176.0 143 60.1
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.5e-41 171.4 151 63.6
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 9.4e-41 170.6 155 60.0
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.4e-39 166.8 147 61.9
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.4e-36 156.8 158 53.2
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-34 149.8 95 74.7
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.5e-33 146.0 131 67.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.5e-33 146.0 104 75.0
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.7e-32 141.7 81 81.5
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.1e-32 141.4 98 70.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 5.7e-30 134.8 85 78.8
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-29 133.3 154 49.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.9e-26 122.5 93 76.3
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.9e-26 122.5 93 76.3
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.9e-26 122.5 115 59.1
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 6.5e-26 121.3 154 45.5
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 8.5e-26 120.9 107 59.8
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.0e-23 112.1 127 50.4
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 2.4e-20 102.8 93 61.3
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 4.1e-20 102.1 118 44.1
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.5e-17 93.6 103 42.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.7e-16 88.6 142 38.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.9e-15 84.3 44 86.4
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.2e-13 79.7 66 63.6
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.9e-13 78.6 78 65.4
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.1e-12 77.4 84 51.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.6e-11 73.6 69 59.4
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-10 70.5 49 77.6
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.7e-10 70.1 106 34.9
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 3.3e-09 65.9 68 52.9
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.3e-09 65.5 139 35.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 4.4e-06 55.5 85 41.2


User provided reference genes

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