Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.2e-79 298.9 154 100.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.1e-57 224.9 117 100.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.1e-57 224.9 117 100.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.4e-41 171.4 148 66.2
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 6.0e-40 167.9 151 64.9
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 7.8e-40 167.5 148 65.5
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 7.8e-40 167.5 148 65.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.7e-39 166.4 148 64.9
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.0e-39 165.6 151 64.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 6.6e-39 164.5 148 64.2
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 6.6e-39 164.5 148 64.2
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 3.1e-36 155.6 144 63.9
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.0e-35 152.9 117 71.8
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.7e-34 149.8 117 70.9
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.4e-33 146.7 117 70.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 2.4e-33 146.0 131 67.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 9.2e-33 144.1 113 70.8
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.2e-32 143.7 115 69.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.6e-32 143.3 130 61.5
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.6e-32 143.3 113 70.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.3e-31 140.2 130 62.3
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.3e-31 140.2 145 55.2
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.3e-31 140.2 144 55.6
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.3e-31 140.2 133 59.4
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.7e-31 139.8 144 54.2
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 3.0e-31 139.0 128 60.9
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.9e-31 138.7 149 59.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 3.9e-31 138.7 129 61.2
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.9e-31 138.7 130 61.5
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 5.1e-31 138.3 128 57.8
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.1e-31 138.3 146 56.2
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-30 137.1 148 55.4
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.1e-30 137.1 129 61.2
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.1e-30 137.1 129 63.6
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.5e-30 136.7 138 56.5
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.5e-30 136.7 145 55.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.9e-30 136.3 129 56.6
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.5e-30 136.0 128 59.4
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.5e-30 136.0 128 60.2
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.3e-30 135.6 149 59.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 3.3e-30 135.6 145 54.5
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.3e-30 135.2 130 61.5
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.3e-30 135.2 130 61.5
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 4.3e-30 135.2 137 56.9
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.3e-30 135.2 130 61.5
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.3e-30 135.2 130 61.5
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 4.3e-30 135.2 129 59.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 4.3e-30 135.2 125 61.6
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 5.6e-30 134.8 146 56.8
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 5.6e-30 134.8 147 55.8
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 5.6e-30 134.8 147 55.8
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 7.3e-30 134.4 139 53.2
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 7.3e-30 134.4 131 61.1
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.3e-30 134.4 146 54.1
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.6e-30 134.0 127 57.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 9.6e-30 134.0 124 59.7
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 9.6e-30 134.0 117 64.1
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 9.6e-30 134.0 124 60.5
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 9.6e-30 134.0 146 54.1
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.2e-29 133.7 145 53.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.2e-29 133.7 144 54.2
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.2e-29 133.7 120 63.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.2e-29 133.7 124 60.5
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.6e-29 133.3 107 65.4
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.6e-29 133.3 145 55.9
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.6e-29 133.3 124 61.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.1e-29 132.9 138 57.2
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.1e-29 132.9 131 60.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.1e-29 132.9 142 54.9
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.8e-29 132.5 148 56.1
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.8e-29 132.5 108 66.7
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.8e-29 132.5 123 61.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.6e-29 132.1 143 55.2
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 3.6e-29 132.1 128 57.8
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.6e-29 132.1 128 57.8
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.6e-29 132.1 146 54.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.6e-29 132.1 142 54.2
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.6e-29 132.1 142 54.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 4.7e-29 131.7 124 58.9
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.2e-29 131.3 127 57.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.2e-29 131.3 145 54.5
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 8.1e-29 131.0 142 54.9
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 8.1e-29 131.0 124 58.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.1e-28 130.6 147 52.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.1e-28 130.6 131 59.5
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-28 130.6 146 54.1
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.1e-28 130.6 125 58.4
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.4e-28 130.2 142 56.3
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.4e-28 130.2 124 60.5
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.4e-28 130.2 147 56.5
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.4e-28 130.2 146 54.1
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.4e-28 130.2 146 54.1
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-28 129.8 124 58.9
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.8e-28 129.8 130 58.5
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.1e-28 129.0 115 66.1
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.0e-28 128.6 138 55.1
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 4.0e-28 128.6 144 50.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.0e-28 128.6 128 57.8
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 5.2e-28 128.3 112 61.6
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.8e-28 127.9 145 53.1
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 6.8e-28 127.9 127 55.9
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 6.8e-28 127.9 145 55.9
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 8.9e-28 127.5 132 55.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 8.9e-28 127.5 146 54.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.2e-27 127.1 120 62.5
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.2e-27 127.1 145 53.1
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.2e-27 127.1 130 56.9
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.5e-27 126.7 143 51.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.0e-27 126.3 141 53.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-27 126.3 126 55.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.6e-27 125.9 119 60.5
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.4e-27 125.6 114 61.4
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.4e-27 125.6 128 55.5
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 3.4e-27 125.6 129 58.9
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.4e-27 125.2 125 59.2
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.3e-26 123.6 128 56.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.2e-26 122.9 131 54.2
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.2e-26 122.9 131 54.2
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.9e-26 122.5 131 51.9
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.9e-26 122.5 124 58.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 3.8e-26 122.1 143 53.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.4e-26 121.3 127 55.1
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 6.4e-26 121.3 142 49.3
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.4e-26 121.3 128 57.0
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 8.4e-26 120.9 134 50.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 8.4e-26 120.9 124 57.3
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-25 120.2 103 63.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 4.2e-25 118.6 116 56.9
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.4e-25 118.2 125 58.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 5.4e-25 118.2 141 48.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.2e-24 117.1 139 51.1
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.1e-24 116.3 123 51.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.9e-23 112.1 143 48.3
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.5e-22 110.2 126 54.0
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.5e-22 109.4 146 46.6
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.5e-22 109.4 218 37.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 5.6e-22 108.2 107 64.5
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.3e-21 107.1 125 49.6
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.6e-21 106.7 126 53.2
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 8.1e-21 104.4 124 48.4
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-20 103.2 96 59.4
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 3.4e-19 99.0 62 88.7
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.4e-19 99.0 137 44.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 5.8e-19 98.2 100 56.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.9e-17 93.2 147 39.5
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 7.9e-16 87.8 106 50.0
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.1e-13 79.7 79 60.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 3.6e-13 79.0 83 54.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 6.9e-12 74.7 81 54.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.0e-11 73.2 134 40.3
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.9e-10 69.3 85 45.9
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-09 67.4 66 54.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.2e-09 65.9 136 36.0
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 3.2e-09 65.9 105 42.9
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.2e-08 63.9 69 52.2
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-08 63.2 61 54.1
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.9e-08 61.2 59 54.2
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.0e-07 59.3 60 51.7


User provided reference genes

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