Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p09320 Brassica napus HOM05D001129 ORTHO05D017518 3.3e-183 644.8 309 100.0
BcaC03g17727 Brassica carinata HOM05D001129 ORTHO05D017518 1.2e-87 327.4 356 50.0
A02p38070 Brassica napus HOM05D001129 ORTHO05D017518 1.2e-87 327.4 354 50.6
C02p57360 Brassica napus HOM05D001129 ORTHO05D017518 7.2e-53 211.8 200 57.0
A02p38190 Brassica napus HOM05D001129 ORTHO05D017518 1.2e-50 204.5 432 32.4
C02p57350 Brassica napus HOM05D001129 ORTHO05D026758 1.3e-25 121.3 132 47.7
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 6.0e-23 112.5 318 27.7
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 1.0e-22 111.7 318 28.3
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 1.5e-21 107.8 283 27.2
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 4.3e-21 106.3 283 27.6
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 5.6e-21 105.9 284 28.5
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 1.2e-20 104.8 284 28.2
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 2.1e-20 104.0 316 24.7
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 6.2e-20 102.4 283 26.1
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 1.4e-19 101.3 284 27.1
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 2.3e-19 100.5 255 25.1
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 2.3e-19 100.5 282 24.8
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 5.2e-19 99.4 292 24.7
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 5.2e-19 99.4 316 24.4
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 6.8e-19 99.0 255 25.1
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 6.8e-19 99.0 282 25.5
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 6.8e-19 99.0 283 25.8
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 8.9e-19 98.6 282 25.2
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 8.9e-19 98.6 283 25.1
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 8.9e-19 98.6 320 25.6
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.2e-18 98.2 282 24.5
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 1.2e-18 98.2 283 27.2
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.2e-18 98.2 318 27.4
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 1.5e-18 97.8 292 23.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.0e-18 97.4 258 26.0
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 2.0e-18 97.4 294 25.9
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 2.0e-18 97.4 292 24.3
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.0e-18 97.4 261 26.4
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 2.6e-18 97.1 258 25.6
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 2.6e-18 97.1 258 25.6
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 2.6e-18 97.1 289 26.6
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 3.4e-18 96.7 258 24.4
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 3.4e-18 96.7 258 24.4
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 3.4e-18 96.7 258 24.4
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 3.4e-18 96.7 292 23.3
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.4e-18 96.7 261 26.1
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 3.4e-18 96.7 283 25.4
BcaC09g48997 Brassica carinata HOM05D001129 ORTHO05D018671 4.4e-18 96.3 254 25.2
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 5.8e-18 95.9 292 23.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 5.8e-18 95.9 292 23.3
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 9.9e-18 95.1 321 23.1
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 9.9e-18 95.1 261 25.7
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 9.9e-18 95.1 255 25.9
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 1.3e-17 94.7 284 26.1
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.3e-17 94.7 283 24.4
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.7e-17 94.4 258 25.6
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 1.7e-17 94.4 258 25.6
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.7e-17 94.4 318 25.2
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 2.2e-17 94.0 257 27.2
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 2.9e-17 93.6 257 28.0
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 3.8e-17 93.2 283 26.1
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 3.8e-17 93.2 282 24.8
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 3.8e-17 93.2 283 25.1
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 4.9e-17 92.8 292 22.9
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 4.9e-17 92.8 283 23.3
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 6.4e-17 92.4 257 27.2
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 6.4e-17 92.4 283 23.3
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 1.1e-16 91.7 331 24.8
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.4e-16 91.3 321 24.3
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 1.4e-16 91.3 255 26.3
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.4e-16 91.3 261 25.7
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 1.9e-16 90.9 288 25.7
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.4e-16 90.5 256 26.2
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 3.2e-16 90.1 318 23.6
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 4.1e-16 89.7 257 27.2
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 4.1e-16 89.7 296 24.0
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 4.1e-16 89.7 262 24.8
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 5.4e-16 89.4 256 25.8
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 9.2e-16 88.6 346 23.7
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 1.2e-15 88.2 317 24.9
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 1.6e-15 87.8 295 24.1
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 1.6e-15 87.8 278 23.4
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.1e-15 87.4 258 26.7
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 3.5e-15 86.7 321 26.2
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 4.6e-15 86.3 282 25.5
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 4.6e-15 86.3 259 22.8
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 4.6e-15 86.3 281 23.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 4.6e-15 86.3 256 27.7
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 7.8e-15 85.5 257 25.3
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.0e-14 85.1 281 23.1
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 1.3e-14 84.7 275 24.7
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.7e-14 84.3 294 26.5
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.7e-14 84.3 256 24.2
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 2.3e-14 84.0 283 24.0
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.3e-14 84.0 317 23.3
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 3.0e-14 83.6 259 24.3
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 3.0e-14 83.6 283 25.4
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.0e-14 83.6 283 25.1
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 3.9e-14 83.2 317 23.0
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 3.9e-14 83.2 283 25.4
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 8.6e-14 82.0 256 24.2
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.1e-13 81.6 283 24.7
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.1e-13 81.6 256 25.0
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 1.9e-13 80.9 237 25.3
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-13 80.9 311 22.5
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 2.5e-13 80.5 272 23.2
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 3.3e-13 80.1 257 25.7
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 4.3e-13 79.7 310 23.5
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 9.6e-13 78.6 258 24.8
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.6e-12 77.8 324 24.7
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 2.1e-12 77.4 234 25.6
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 3.6e-12 76.6 285 23.5
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 3.6e-12 76.6 255 23.1
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 3.6e-12 76.6 255 23.1
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 4.7e-12 76.3 267 24.0
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 6.2e-12 75.9 254 25.6
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 8.1e-12 75.5 289 22.1
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 1.1e-11 75.1 285 23.9
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 1.1e-11 75.1 258 23.6
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 2.4e-11 73.9 327 22.9
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 4.0e-11 73.2 284 22.5
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 3.4e-10 70.1 150 30.7
AL2G24780 Arabidopsis lyrata HOM05D001129 ORTHO05D026758 1.3e-09 68.2 285 25.3
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 3.8e-09 66.6 176 27.8
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.4e-08 62.8 297 21.2
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 1.2e-07 61.6 125 28.0
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 2.7e-07 60.5 147 25.2
SMO337G0024 Selaginella moellendorffii HOM05D001129 ORTHO05D003157 6.0e-07 59.3 233 23.2
Atru.chr1.1085 Acer truncatum HOM05D001129 ORTHO05D003157 7.8e-07 58.9 238 22.7
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 1.0e-06 58.5 139 24.5
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 2.3e-06 57.4 121 28.9
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 2.3e-06 57.4 213 23.5
Thhalv10016187m.g Eutrema salsugineum HOM05D001129 ORTHO05D003157 3.0e-06 57.0 240 23.3
Pp3c10_5860 Physcomitrium patens HOM05D001129 ORTHO05D003157 3.0e-06 57.0 186 25.3
Sp4g24050 Schrenkiella parvula HOM05D001129 ORTHO05D003157 6.6e-06 55.8 238 22.7
Mapoly0021s0007 Marchantia polymorpha HOM05D001129 ORTHO05D003157 8.7e-06 55.5 186 24.2


User provided reference genes

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