Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1259.2 634 100.0
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1259.2 634 100.0
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1259.2 634 100.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1252.7 634 99.5
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1252.7 634 99.4
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1248.0 634 98.6
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1235.3 634 97.3
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1233.0 634 97.5
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1231.9 634 97.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1224.5 633 96.5
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1221.5 632 96.4
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1219.1 633 95.9
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1216.1 634 96.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1214.5 633 95.4
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1199.9 633 94.3
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1198.0 633 94.2
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1198.0 632 94.5
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1196.8 632 94.3
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 633 92.6
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 634 90.2
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 638 88.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 634 88.6
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 630 89.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 637 89.0
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 632 89.4
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 637 88.5
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 636 88.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 632 88.6
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 630 89.0
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 630 89.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 88.9
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 87.9
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 632 88.0
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 630 88.6
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 632 88.4
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 630 88.7
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 630 88.6
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 637 87.8
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 87.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 630 88.3
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 631 88.6
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 637 88.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 630 88.3
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 632 88.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 629 88.4
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 637 87.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 631 88.6
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 630 87.3
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 87.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 633 87.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 637 87.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 637 87.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 637 87.8
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 637 87.8
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 633 86.7
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 632 88.0
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 633 87.0
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 630 88.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 637 87.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 637 87.3
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 632 87.7
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 630 87.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 640 86.6
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 630 87.5
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 632 87.8
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 632 87.5
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 632 87.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 657 85.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 632 87.5
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 637 87.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 633 86.3
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 632 87.7
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 630 87.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 632 87.3
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 637 87.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 86.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 630 86.8
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 633 86.7
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 627 87.6
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 637 87.4
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 637 86.7
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 637 86.8
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 630 87.3
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 632 87.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 632 87.3
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 626 87.9
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 637 87.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 630 86.8
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1112.4 630 86.2
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 630 85.4
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 630 86.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 634 87.2
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1105.5 630 86.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1102.4 630 86.5
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1096.6 632 85.8
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1094.3 637 84.6
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1091.6 633 84.4
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.3e-306 1055.8 628 81.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.7e-306 1055.4 628 81.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.9e-306 1053.9 582 88.8
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 6.4e-306 1053.5 640 83.0
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.6e-304 1047.3 628 80.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 8.4e-298 1026.5 634 79.0
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.2e-290 1001.9 635 77.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 6.4e-282 973.8 534 89.5
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 3.9e-279 964.5 544 88.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.1e-276 956.4 534 87.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 2.5e-270 935.3 642 72.9
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.9e-265 919.1 629 72.5
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.3e-263 912.1 647 71.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 5.7e-262 907.5 636 72.8
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.2e-258 895.6 494 89.5
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.6e-243 846.3 503 83.7
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 9.4e-241 837.0 630 70.2
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.2e-239 831.2 503 82.1
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.7e-235 818.9 637 65.6
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.7e-234 816.2 630 68.7
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 3.6e-232 808.5 494 81.4
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.2e-225 785.0 638 61.8
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.8e-200 702.6 444 79.1
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-191 672.9 535 67.7
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 9.0e-183 644.4 642 52.5
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.0e-175 619.0 443 72.2
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.4e-174 615.9 354 85.0
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.0e-163 578.6 404 75.0
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 7.1e-156 555.1 315 88.9
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 8.2e-152 541.6 275 98.5
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 5.1e-146 522.3 295 88.1
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 7.0e-111 405.6 515 42.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.5e-92 342.0 201 85.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.7e-85 321.2 233 70.8
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.5e-84 318.2 178 88.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 5.2e-82 309.7 231 68.0
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 7.3e-76 289.3 162 85.8
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 5.8e-73 279.6 163 84.0
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.8e-67 260.0 630 31.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 9.9e-57 225.7 273 48.4
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 6.9e-50 203.0 231 52.4
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.6e-41 174.5 98 86.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.8e-40 170.6 105 77.1
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.4e-40 169.5 98 83.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.9e-39 168.3 99 84.8
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 7.9e-38 162.9 90 88.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.9e-36 158.3 86 83.7
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.9e-36 158.3 156 59.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.3e-36 157.5 74 98.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.2e-33 149.1 122 64.8
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 5.0e-32 143.7 91 76.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 6.5e-32 143.3 91 76.9
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.4e-21 109.0 53 100.0
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 5.1e-21 107.1 115 53.9
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 8.8e-21 106.3 63 79.4
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.3e-16 92.4 60 73.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.2e-16 91.7 69 63.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 2.9e-16 91.3 51 82.4
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.7e-14 84.7 49 79.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.7e-11 74.3 56 60.7
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.2e-09 69.3 65 52.3


User provided reference genes

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