Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p05300 Brassica napus HOM05D003502 ORTHO05D010567 2.3e-57 225.3 110 100.0
BcaC08g43210 Brassica carinata HOM05D003502 ORTHO05D010567 9.9e-29 130.2 69 95.7
BolC6t35637H Brassica oleracea HOM05D008752 ORTHO05D010567 9.9e-29 130.2 69 95.7
BraA06t23538Z Brassica rapa HOM05D008752 ORTHO05D010567 9.9e-29 130.2 69 95.7
A06p03270 Brassica napus HOM05D008752 ORTHO05D010567 3.7e-28 128.3 69 94.2
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 4.1e-27 124.8 63 98.4
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 7.1e-27 124.0 65 93.8
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 7.1e-27 124.0 65 93.8
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 7.1e-27 124.0 65 93.8
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 7.1e-27 124.0 65 93.8
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 7.1e-27 124.0 65 93.8
C06p05280 Brassica napus HOM05D008752 ORTHO05D010567 9.2e-27 123.6 68 91.2
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 1.6e-26 122.9 65 92.3
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 3.5e-26 121.7 65 92.3
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 3.5e-26 121.7 65 92.3
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 1.0e-25 120.2 65 90.8
BcaC08g43206 Brassica carinata HOM05D003502 ORTHO05D010567 1.0e-25 120.2 68 89.7
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 3.0e-25 118.6 65 89.2
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 3.3e-24 115.2 65 87.7
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 5.6e-24 114.4 65 84.6
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 1.2e-23 113.2 65 84.6
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 2.0e-21 105.9 65 80.0
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 5.8e-21 104.4 65 78.5
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 9.9e-21 103.6 64 79.7
BolC6t35638H Brassica oleracea HOM05D003502 ORTHO05D010567 5.4e-19 97.8 59 83.1
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 5.4e-19 97.8 65 72.3
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 9.2e-19 97.1 65 73.8
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 1.2e-18 96.7 65 73.8
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 1.6e-18 96.3 65 73.8
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 2.1e-18 95.9 65 72.3
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 3.5e-18 95.1 65 72.3
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 3.5e-18 95.1 65 73.8
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 4.6e-18 94.7 65 70.8
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 4.6e-18 94.7 65 72.3
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 4.6e-18 94.7 65 72.3
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 4.6e-18 94.7 65 72.3
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 6.0e-18 94.4 65 72.3
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 6.0e-18 94.4 65 72.3
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 6.0e-18 94.4 65 72.3
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 6.0e-18 94.4 65 72.3
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 6.0e-18 94.4 65 70.8
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 7.8e-18 94.0 65 70.8
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 7.8e-18 94.0 65 72.3
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 7.8e-18 94.0 65 72.3
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 7.8e-18 94.0 65 69.2
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 1.0e-17 93.6 65 70.8
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 1.0e-17 93.6 65 70.8
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 1.0e-17 93.6 65 72.3
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 1.3e-17 93.2 65 69.2
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 1.3e-17 93.2 65 69.2
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 69.2
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 69.2
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 69.2
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 69.2
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 70.8
PSO339G1860 Papaver somniferum HOM05D003502 ORTHO05D010567 2.3e-17 92.4 65 70.8
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 70.8
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 70.8
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 2.3e-17 92.4 65 69.2
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 3.0e-17 92.0 65 69.2
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 67.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 67.7
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 66.2
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 66.2
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 69.2
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 69.2
PGSC0003DMG400000538 Solanum tuberosum HOM05D003502 ORTHO05D004250 3.9e-17 91.7 65 69.2
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 6.6e-17 90.9 65 67.7
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 6.6e-17 90.9 65 67.7
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 6.6e-17 90.9 70 61.4
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 6.6e-17 90.9 65 70.8
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 8.7e-17 90.5 65 69.2
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 8.7e-17 90.5 65 66.2
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.1e-16 90.1 65 67.7
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.1e-16 90.1 65 67.7
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 1.1e-16 90.1 65 69.2
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 1.1e-16 90.1 65 69.2
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 1.1e-16 90.1 65 64.6
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.9e-16 89.4 65 66.2
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 2.5e-16 89.0 65 64.6
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 2.5e-16 89.0 65 66.2
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 2.5e-16 89.0 65 66.2
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 4.3e-16 88.2 66 69.7
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 4.3e-16 88.2 65 64.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 7.3e-16 87.4 65 69.2
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 7.3e-16 87.4 65 61.5
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 7.3e-16 87.4 65 64.6
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 9.6e-16 87.0 65 66.2
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 9.6e-16 87.0 65 63.1
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 9.6e-16 87.0 65 64.6
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 1.2e-15 86.7 64 64.1
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 1.6e-15 86.3 65 63.1
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 1.6e-15 86.3 65 63.1
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 2.1e-15 85.9 65 64.6
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 2.1e-15 85.9 65 64.6
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 3.6e-15 85.1 65 61.5
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 3.6e-15 85.1 65 63.1
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 4.7e-15 84.7 65 60.0
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 4.7e-15 84.7 65 66.2
Peaxi162Scf00745g00858 Petunia axillaris HOM05D003502 ORTHO05D010567 4.7e-15 84.7 65 61.5
SHI02509 Sapria himalayana HOM05D003502 ORTHO05D010567 4.7e-15 84.7 65 69.2
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 4.7e-15 84.7 65 63.1
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 6.2e-15 84.3 65 61.5
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 6.2e-15 84.3 66 68.2
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 8.1e-15 84.0 65 61.5
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 8.1e-15 84.0 73 57.5
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 1.8e-14 82.8 64 67.2
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 3.1e-14 82.0 65 60.0
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 5.2e-14 81.3 65 61.5
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 2.0e-13 79.3 65 63.1
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 3.4e-13 78.6 65 60.0
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 4.4e-13 78.2 65 60.0
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 7.6e-13 77.4 64 57.8
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 1.3e-12 76.6 65 58.5
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 1.7e-12 76.3 65 58.5
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 3.8e-12 75.1 65 55.4
CsaV3_5G005300 Cucumis sativus L. HOM05D003502 ORTHO05D010567 6.4e-12 74.3 53 69.8
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 8.4e-12 73.9 65 55.4
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 8.4e-12 73.9 65 55.4
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 5.4e-11 71.2 65 52.3
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 1.2e-10 70.1 80 50.0
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 2.7e-10 68.9 65 49.2
HanXRQChr17g0543411 Helianthus annuus HOM05D003502 ORTHO05D010567 1.3e-09 66.6 57 56.1
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 1.7e-09 66.2 66 51.5
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 2.3e-09 65.9 65 50.8
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 3.3e-08 62.0 92 42.4
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 6.2e-07 57.8 62 51.6
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 8.1e-07 57.4 65 43.1
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 1.4e-06 56.6 65 47.7
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 4.0e-06 55.1 64 48.4
Lj3A923T57 Lonicera japonica HOM05D003502 ORTHO05D004250 4.0e-06 55.1 37 73.0


User provided reference genes

Program Settings