Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.1e-164 583.2 282 100.0
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.1e-164 583.2 282 100.0
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 7.1e-164 580.5 282 99.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 3.9e-154 548.1 283 95.4
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 5.6e-153 544.3 283 94.3
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.2e-120 436.0 278 79.5
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.8e-119 433.0 277 76.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.5e-113 412.5 277 76.2
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.5e-113 412.5 286 72.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 4.3e-113 411.8 282 72.7
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 9.7e-113 410.6 281 73.3
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.8e-112 409.1 277 74.7
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.1e-111 407.1 282 74.1
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.5e-110 403.3 281 72.2
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.5e-110 403.3 281 72.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 5.9e-110 401.4 282 72.7
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 5.9e-110 401.4 282 72.7
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.1e-107 392.9 277 70.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.0e-101 374.0 277 66.1
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.6e-89 332.8 278 62.6
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 3.7e-88 328.9 280 60.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 4.8e-88 328.6 278 59.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 6.3e-88 328.2 278 61.2
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 7.0e-87 324.7 277 59.9
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.0e-86 323.2 281 59.4
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.5e-86 322.4 288 57.6
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.0e-85 320.9 273 60.8
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.0e-85 320.9 275 58.2
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.2e-85 319.7 281 58.7
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.9e-85 319.3 280 59.6
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.9e-85 319.3 279 58.8
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.0e-85 318.5 281 58.7
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 6.5e-85 318.2 286 57.0
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 6.5e-85 318.2 278 57.6
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 8.5e-85 317.8 281 58.4
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.5e-84 316.2 281 58.4
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.2e-84 315.8 282 58.2
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 5.5e-84 315.1 278 59.0
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 5.5e-84 315.1 276 59.4
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.4e-84 314.3 276 58.3
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-83 313.9 241 64.7
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-83 313.5 276 57.6
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.1e-83 313.2 275 56.4
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.7e-83 312.8 277 55.6
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 2.7e-83 312.8 277 56.0
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 6.1e-83 311.6 273 58.2
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 8.0e-83 311.2 276 58.0
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.4e-82 310.5 275 56.7
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.8e-82 310.1 277 56.3
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.0e-82 308.9 275 55.6
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 6.8e-82 308.1 276 57.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 6.8e-82 308.1 275 56.0
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 6.8e-82 308.1 279 57.3
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 8.8e-82 307.8 240 62.5
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.5e-81 307.0 278 55.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 2.6e-81 306.2 276 57.6
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.6e-81 306.2 276 56.9
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 7.5e-81 304.7 276 54.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.3e-80 303.9 278 54.7
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.3e-80 303.9 277 54.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.8e-80 302.8 276 55.1
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 3.7e-80 302.4 289 56.4
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 4.9e-80 302.0 271 56.8
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 6.3e-80 301.6 276 55.8
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.4e-79 299.7 284 53.9
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.4e-79 299.7 240 61.2
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 5.4e-79 298.5 316 50.6
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.6e-78 297.0 309 52.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.0e-78 296.6 237 61.2
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.7e-78 296.2 277 54.9
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 3.5e-78 295.8 275 56.4
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 3.5e-78 295.8 275 56.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.5e-78 295.4 280 55.7
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 7.7e-78 294.7 278 54.7
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.0e-77 294.3 273 55.3
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.0e-77 294.3 277 54.2
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 2.9e-77 292.7 267 55.8
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 8.6e-77 291.2 279 56.3
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 8.6e-77 291.2 277 53.4
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.1e-76 290.8 275 54.2
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.1e-76 290.8 237 61.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.9e-76 290.0 246 57.3
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.9e-76 290.0 343 46.9
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.3e-76 289.3 276 57.2
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 9.5e-76 287.7 274 55.1
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.0e-74 284.3 242 57.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 5.2e-74 282.0 276 53.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 6.8e-74 281.6 360 46.7
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 8.9e-74 281.2 277 53.1
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.2e-73 280.8 285 51.2
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.5e-73 280.4 279 53.8
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.4e-73 279.3 248 56.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 4.4e-73 278.9 243 57.2
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 7.5e-73 278.1 279 51.3
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 7.5e-73 278.1 239 58.2
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 9.8e-73 277.7 277 52.3
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.7e-72 275.8 257 55.3
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 3.7e-72 275.8 251 58.2
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 3.7e-72 275.8 264 54.9
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.8e-71 273.5 243 55.1
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 9.2e-71 271.2 282 50.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 3.5e-70 269.2 234 56.0
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 3.5e-70 269.2 195 64.6
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 7.8e-70 268.1 242 55.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.0e-69 267.7 235 56.2
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.2e-66 255.4 275 51.6
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.8e-65 251.9 295 47.5
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.7e-64 250.4 238 52.1
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 3.2e-63 246.1 277 49.1
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.0e-61 241.1 281 47.7
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.3e-61 240.0 283 45.6
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 6.4e-56 221.9 242 46.3
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 5.4e-55 218.8 234 49.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.6e-54 217.2 242 48.8
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.0e-53 214.5 224 52.7
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-53 214.2 246 46.3
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.4e-49 199.5 167 59.9
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 9.2e-47 191.4 109 86.2
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.3e-45 187.6 187 53.5
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.3e-45 186.8 163 58.3
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.5e-44 184.1 234 43.6
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 9.6e-44 181.4 240 41.2
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.8e-43 179.9 167 53.9
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.4e-42 176.8 204 46.6
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.9e-40 169.9 235 42.6
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.9e-40 169.1 159 55.3
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.2e-38 164.5 228 44.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 3.0e-37 159.8 216 44.9
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.5e-36 156.8 279 36.6
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 5.6e-36 155.6 241 38.2
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.1e-35 153.7 128 59.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 3.1e-34 149.8 131 57.3
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-33 147.5 127 59.1
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 9.9e-33 144.8 127 54.3
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.8e-32 142.9 146 58.9
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 2.1e-30 137.1 73 82.2
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.0e-29 133.3 89 67.4
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.1e-26 123.2 77 74.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.5e-25 120.9 217 37.3
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 7.6e-25 118.6 177 39.5
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 6.0e-22 109.0 273 31.1
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-21 107.8 99 58.6
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.7e-21 105.1 63 69.8
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.6e-19 100.9 62 72.6
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.2e-19 99.0 86 52.3
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 5.3e-18 95.9 85 54.1
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.0e-16 91.7 58 70.7
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.9e-15 87.4 169 35.5
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.2e-15 86.3 49 67.3
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 7.4e-12 75.5 96 44.8
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.8e-11 73.6 63 57.1
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-10 71.2 166 35.5
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-10 70.9 53 62.3
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.2e-08 63.9 68 47.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 7.2e-07 58.9 46 60.9
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 7.2e-07 58.9 83 38.6
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.2e-06 58.2 54 46.3
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.1e-06 55.8 49 57.1


User provided reference genes

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