Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-68 262.3 124 100.0
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.8e-47 192.6 124 79.0
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 5.0e-37 157.9 110 73.6
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.4e-36 156.4 122 65.6
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.4e-36 156.4 110 72.7
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.9e-36 156.0 122 65.6
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.9e-36 156.0 122 65.6
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 2.5e-36 155.6 110 71.8
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 2.5e-36 155.6 110 71.8
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 2.5e-36 155.6 110 71.8
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 2.5e-36 155.6 110 71.8
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 2.5e-36 155.6 110 71.8
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 4.2e-36 154.8 110 71.8
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 9.4e-36 153.7 110 70.9
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.0e-34 150.2 109 69.7
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.0e-34 150.2 109 69.7
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.0e-34 150.2 109 69.7
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.0e-34 150.2 109 69.7
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.0e-34 150.2 109 69.7
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 3.0e-34 148.7 110 68.2
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.4e-31 139.0 110 62.7
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 5.3e-31 137.9 110 66.4
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 7.0e-31 137.5 110 62.7
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 7.0e-31 137.5 110 62.7
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.0e-30 136.0 110 61.8
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 4.5e-30 134.8 110 61.8
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 5.9e-30 134.4 112 58.9
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 1.3e-29 133.3 112 58.9
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.3e-29 133.3 110 60.0
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.3e-29 133.3 110 60.0
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.3e-29 133.3 112 59.8
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.7e-29 132.9 112 58.0
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 2.2e-29 132.5 110 59.1
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.9e-29 132.1 112 58.9
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 3.8e-29 131.7 110 60.0
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 5.0e-29 131.3 112 58.9
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 8.5e-29 130.6 112 57.1
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 8.5e-29 130.6 112 57.1
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 8.5e-29 130.6 112 57.1
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 8.5e-29 130.6 112 56.2
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 8.5e-29 130.6 112 57.1
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.1e-28 130.2 110 58.2
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.1e-28 130.2 110 58.2
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.5e-28 129.8 110 60.0
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.5e-28 129.8 112 58.0
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.9e-28 129.4 112 58.9
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.9e-28 129.4 110 59.1
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.9e-28 129.4 110 59.1
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.9e-28 129.4 112 56.2
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.9e-28 129.4 112 58.0
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.5e-28 129.0 112 58.0
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.5e-28 129.0 112 57.1
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.2e-28 128.3 112 59.8
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 4.2e-28 128.3 110 59.1
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 4.2e-28 128.3 110 57.3
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 4.2e-28 128.3 115 58.3
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 5.5e-28 127.9 110 59.1
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 5.5e-28 127.9 115 57.4
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 5.5e-28 127.9 110 57.3
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 7.2e-28 127.5 110 56.4
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 7.2e-28 127.5 112 55.4
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 9.4e-28 127.1 112 55.4
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 9.4e-28 127.1 112 57.1
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.2e-27 126.7 59 100.0
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.2e-27 126.7 110 57.3
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.2e-27 126.7 110 56.4
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 2.1e-27 125.9 112 57.1
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.1e-27 125.9 112 56.2
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 2.1e-27 125.9 112 56.2
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.1e-27 125.9 110 55.5
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 2.1e-27 125.9 110 55.5
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 2.1e-27 125.9 122 51.6
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 2.7e-27 125.6 104 59.6
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 2.7e-27 125.6 112 52.7
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 2.7e-27 125.6 110 57.3
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.7e-27 125.6 114 56.1
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 2.7e-27 125.6 112 56.2
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 2.7e-27 125.6 110 57.3
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.7e-27 125.6 110 57.3
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 3.6e-27 125.2 112 55.4
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 4.7e-27 124.8 122 50.8
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 4.7e-27 124.8 110 56.4
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 4.7e-27 124.8 110 56.4
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 6.1e-27 124.4 110 57.3
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 6.1e-27 124.4 110 57.3
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 1.0e-26 123.6 112 56.2
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 1.0e-26 123.6 110 56.4
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.0e-26 123.6 110 57.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 1.4e-26 123.2 110 55.5
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.4e-26 123.2 110 56.4
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 1.8e-26 122.9 110 55.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 1.8e-26 122.9 110 55.5
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.8e-26 122.9 110 55.5
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 3.0e-26 122.1 112 53.6
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 3.0e-26 122.1 110 56.4
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 3.0e-26 122.1 110 56.4
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 3.0e-26 122.1 112 54.5
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 3.0e-26 122.1 110 55.5
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.0e-26 122.1 109 58.7
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 3.0e-26 122.1 110 54.5
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 3.0e-26 122.1 110 55.5
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 4.0e-26 121.7 112 53.6
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 4.0e-26 121.7 112 53.6
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 5.2e-26 121.3 106 57.5
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 5.2e-26 121.3 110 54.5
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 5.2e-26 121.3 110 54.5
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 5.2e-26 121.3 111 55.9
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 5.2e-26 121.3 107 57.0
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 6.7e-26 120.9 104 57.7
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 6.7e-26 120.9 106 56.6
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 8.8e-26 120.6 110 55.5
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 8.8e-26 120.6 104 58.7
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.1e-25 120.2 112 52.7
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 1.5e-25 119.8 104 57.7
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 2.6e-25 119.0 103 55.3
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 2.6e-25 119.0 103 55.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 3.3e-25 118.6 104 56.7
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 7.5e-25 117.5 112 51.8
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 4.8e-24 114.8 104 55.8
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.4e-23 113.2 104 54.8
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 4.1e-23 111.7 101 55.4
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 4.5e-22 108.2 93 61.3
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.7e-21 106.3 107 51.4
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 3.6e-19 98.6 59 71.2
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 6.1e-19 97.8 92 56.5
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 5.2e-18 94.7 63 65.1
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 7.5e-17 90.9 64 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.2e-16 89.4 100 47.0
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 8.3e-16 87.4 86 51.2
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 9.1e-15 84.0 96 49.0
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.6e-14 83.2 104 45.2
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 4.7e-11 71.6 100 41.0
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 4.7e-11 71.6 110 40.0
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 6.1e-11 71.2 83 44.6
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 4.0e-10 68.6 59 52.5
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.5e-09 66.6 39 74.4
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.7e-08 63.2 104 34.6
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 6.3e-08 61.2 106 36.8
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.1e-07 60.5 101 37.6
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 2.4e-07 59.3 100 35.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 5.4e-07 58.2 72 45.8


User provided reference genes

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