Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 8.1e-213 743.4 361 100.0
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 8.1e-213 743.4 361 100.0
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 8.1e-213 743.4 361 100.0
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 8.1e-213 743.4 361 100.0
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 8.1e-213 743.4 361 100.0
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.7e-210 735.7 361 98.9
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.5e-198 696.0 360 92.8
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 3.3e-198 694.9 360 92.5
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 5.6e-198 694.1 360 92.5
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 9.6e-198 693.3 363 92.3
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.3e-197 693.0 363 91.7
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 2.4e-196 688.7 360 92.8
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 3.4e-195 684.9 360 92.2
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 2.2e-194 682.2 363 90.4
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 8.4e-194 680.2 360 91.4
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 9.3e-193 676.8 391 84.9
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.3e-189 666.4 362 88.4
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.3e-189 666.4 362 88.4
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.8e-189 664.5 362 87.0
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.6e-187 657.1 360 87.5
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.7e-186 656.0 362 86.7
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 7.1e-185 650.6 362 85.9
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 9.3e-185 650.2 362 86.2
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.7e-184 648.7 362 85.9
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.0e-183 646.7 362 85.4
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.3e-183 646.4 362 85.4
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.1e-182 643.3 363 84.6
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 3.3e-182 641.7 362 84.5
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.3e-182 641.7 362 84.5
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.6e-181 639.4 362 84.5
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 8.1e-181 637.1 362 84.8
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 3.1e-180 635.2 362 83.4
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.1e-180 635.2 362 83.7
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 6.9e-180 634.0 369 83.5
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 9.0e-180 633.6 363 84.3
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 9.0e-180 633.6 360 84.7
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 9.0e-180 633.6 376 81.4
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.0e-179 632.5 362 83.4
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.6e-179 632.1 359 83.8
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 4.5e-179 631.3 360 84.4
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.7e-178 629.4 362 83.4
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 2.9e-178 628.6 362 82.6
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 3.8e-178 628.2 362 83.7
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 8.4e-178 627.1 364 81.9
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.1e-177 626.7 363 83.2
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 1.9e-177 625.9 362 82.9
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 2.5e-177 625.5 362 82.6
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.6e-176 622.9 362 82.9
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.1e-176 622.5 362 82.6
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.1e-176 622.5 362 82.9
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 7.9e-176 620.5 362 82.6
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.0e-175 620.2 362 82.6
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.0e-175 620.2 362 82.6
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.0e-175 620.2 361 82.3
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.3e-175 619.0 362 82.6
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 5.1e-175 617.8 362 81.8
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 6.7e-175 617.5 401 75.6
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 6.7e-175 617.5 362 81.5
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 8.7e-175 617.1 362 82.0
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 8.7e-175 617.1 364 80.8
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.1e-174 616.7 362 81.5
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.5e-174 616.3 361 82.5
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.9e-174 615.9 362 82.0
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 1.9e-174 615.9 362 81.8
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 2.5e-174 615.5 360 81.9
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 3.3e-174 615.1 363 81.8
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.3e-174 614.8 364 80.5
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 5.7e-174 614.4 364 81.3
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.6e-174 613.6 363 81.8
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.3e-173 613.2 362 81.8
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.8e-173 612.1 361 82.0
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.7e-173 611.7 364 79.9
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.1e-172 610.1 362 81.2
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.4e-172 609.8 362 82.0
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 2.4e-172 609.0 353 83.0
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 5.3e-172 607.8 362 80.1
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.5e-171 606.3 363 79.9
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 2.0e-171 605.9 362 79.8
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.4e-171 605.1 362 79.3
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 7.6e-171 604.0 364 81.0
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.7e-170 602.8 364 79.9
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 2.9e-170 602.1 360 80.0
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 2.9e-170 602.1 363 79.3
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.4e-169 599.7 360 78.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.2e-169 598.6 362 80.7
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 5.5e-169 597.8 364 79.7
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.6e-168 596.3 349 83.1
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.6e-168 596.3 363 76.3
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 2.7e-168 595.5 362 79.6
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 6.1e-168 594.3 348 82.5
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.9e-168 594.0 375 76.5
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.8e-167 592.8 364 78.3
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 3.9e-167 591.7 362 78.7
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.1e-166 590.1 362 78.5
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.9e-166 589.3 360 78.6
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.9e-166 589.3 389 74.8
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.3e-166 588.6 360 78.3
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 3.7e-165 585.1 362 76.5
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 4.8e-165 584.7 342 81.9
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 8.2e-165 583.9 362 78.2
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.8e-164 582.8 362 75.4
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.1e-164 582.0 359 79.1
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.2e-163 580.1 360 77.2
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.9e-163 577.8 363 78.5
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 5.9e-163 577.8 360 76.4
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.3e-162 576.6 364 78.8
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.7e-162 576.2 364 76.6
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 2.2e-162 575.9 359 77.4
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.9e-162 575.5 343 80.5
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 6.5e-162 574.3 360 76.4
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 7.2e-161 570.9 360 75.8
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.8e-159 566.2 362 77.9
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.1e-158 563.5 360 76.7
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 3.3e-158 562.0 354 76.0
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 3.3e-158 562.0 359 76.9
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.3e-157 560.1 362 74.6
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 2.2e-157 559.3 362 76.0
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 6.9e-156 554.3 357 75.9
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 6.9e-156 554.3 359 74.7
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 6.9e-156 554.3 424 66.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.2e-155 553.5 367 73.6
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 1.5e-155 553.1 359 74.7
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.0e-155 552.7 357 74.5
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 3.4e-155 552.0 361 74.5
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 7.7e-155 550.8 343 77.0
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 2.2e-154 549.3 362 75.4
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-153 546.6 360 71.9
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 7.2e-153 544.3 360 71.9
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.1e-152 542.7 341 77.4
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.1e-152 542.7 361 73.1
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.7e-152 542.3 359 73.5
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 5.1e-151 538.1 343 77.3
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 4.4e-150 535.0 361 70.6
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.3e-149 533.5 361 72.3
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.6e-147 525.8 359 70.5
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 7.7e-147 524.2 386 70.2
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 5.0e-146 521.5 363 71.6
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.6e-144 516.5 274 91.6
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.1e-144 516.2 360 66.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 7.5e-142 507.7 360 66.4
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 6.3e-141 504.6 360 66.7
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 4.1e-140 501.9 363 65.3
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 5.3e-140 501.5 360 65.6
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 5.3e-140 501.5 360 65.8
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 7.7e-139 497.7 360 65.6
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 8.5e-138 494.2 351 68.7
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.6e-136 490.0 353 68.0
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.7e-136 488.4 362 63.8
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 7.5e-134 481.1 359 66.3
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.8e-132 476.5 326 72.4
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.2e-130 469.5 284 79.6
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.2e-128 463.8 272 82.7
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 4.7e-128 461.8 344 70.1
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 3.0e-127 459.1 289 76.8
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 5.2e-127 458.4 270 80.4
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 5.7e-126 454.9 271 81.2
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 4.1e-124 448.7 381 57.5
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 3.5e-123 445.7 325 68.3
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 4.0e-119 432.2 270 77.4
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.7e-117 426.8 354 57.1
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 2.4e-116 422.9 272 75.7
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 3.9e-114 415.6 390 53.8
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.3e-113 412.1 362 55.0
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.6e-112 410.2 288 68.1
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.6e-112 410.2 240 82.5
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.2e-107 394.0 269 69.5
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 3.1e-87 326.2 271 62.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.2e-87 325.5 189 81.0
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.3e-85 320.9 223 72.2
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 7.1e-84 315.1 178 85.4
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.6e-82 308.5 197 73.6
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 4.8e-80 302.4 160 90.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 8.2e-56 221.9 266 50.4
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.1e-47 193.4 360 32.5
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 7.2e-44 182.2 438 28.1
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.2e-43 181.4 400 27.8
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 8.8e-42 175.3 114 78.9
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 4.2e-36 156.4 119 63.9
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 6.1e-35 152.5 147 56.5
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.0e-34 151.8 119 62.2
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.3e-32 144.8 294 29.9
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.8e-31 141.0 98 64.3
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 5.5e-28 129.4 75 77.3
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 2.6e-09 67.4 68 52.9
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 9.8e-09 65.5 49 67.3


User provided reference genes

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