Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.3e-137 493.0 248 100.0
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 9.1e-131 470.3 236 100.0
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 2.6e-130 468.8 236 99.2
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 1.0e-129 466.8 236 98.7
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.0e-121 440.3 236 94.1
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.3e-116 423.3 239 90.0
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.0e-115 417.5 239 88.7
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 2.6e-114 415.6 236 86.9
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 2.1e-111 406.0 238 86.6
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 2.3e-110 402.5 239 84.9
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.2e-109 400.2 239 84.1
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 8.3e-100 367.5 236 80.9
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.4e-99 364.8 236 81.4
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.7e-97 359.8 232 78.4
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.6e-95 353.2 248 75.0
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 8.9e-94 347.4 236 76.3
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 2.0e-93 346.3 186 88.2
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 3.4e-93 345.5 186 88.2
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 9.8e-93 344.0 186 87.6
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 9.8e-93 344.0 240 74.6
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 1.3e-92 343.6 186 87.6
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 6.3e-92 341.3 186 87.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.1e-91 340.5 236 72.0
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.8e-91 339.7 239 71.1
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.4e-91 339.3 239 71.1
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 2.4e-91 339.3 239 71.1
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 4.1e-91 338.6 186 86.0
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.3e-88 328.9 237 72.6
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.3e-88 328.9 239 69.5
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.6e-87 326.6 240 71.2
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 2.1e-87 326.2 242 69.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 2.1e-87 326.2 239 69.5
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 2.8e-87 325.9 242 68.2
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 6.1e-87 324.7 230 71.3
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 6.1e-87 324.7 230 71.3
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 8.0e-87 324.3 240 70.8
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.4e-86 323.6 202 80.7
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 3.1e-86 322.4 240 68.8
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 4.0e-86 322.0 243 65.4
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 6.8e-86 321.2 237 69.2
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 1.2e-85 320.5 239 68.6
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.2e-85 320.5 240 68.3
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 2.0e-85 319.7 244 67.6
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.6e-85 319.3 186 80.6
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 3.4e-85 318.9 239 66.9
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 7.5e-85 317.8 239 67.8
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 1.7e-84 316.6 238 67.6
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.2e-84 316.2 243 66.7
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 3.7e-84 315.5 241 68.9
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 4.9e-84 315.1 244 66.4
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 6.4e-84 314.7 220 70.9
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.4e-83 313.5 186 83.9
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.4e-83 312.8 229 68.1
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 4.1e-83 312.0 238 67.2
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 7.0e-83 311.2 238 65.5
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.2e-82 310.5 234 67.5
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.6e-82 310.1 236 66.1
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.6e-82 310.1 237 65.0
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.6e-82 310.1 186 76.9
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 2.7e-82 309.3 242 66.5
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 2.7e-82 309.3 248 66.1
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 2.7e-82 309.3 242 65.3
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 3.5e-82 308.9 243 65.8
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 3.5e-82 308.9 239 65.3
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 4.6e-82 308.5 245 66.1
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 4.6e-82 308.5 244 64.3
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 6.0e-82 308.1 247 65.6
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 7.8e-82 307.8 213 68.5
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 7.8e-82 307.8 236 64.8
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 1.0e-81 307.4 244 66.0
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.3e-81 307.0 244 66.0
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.3e-81 307.0 236 65.3
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 2.3e-81 306.2 227 67.4
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 3.9e-81 305.4 236 65.3
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 3.9e-81 305.4 186 75.3
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 3.9e-81 305.4 244 63.5
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.0e-81 305.1 242 64.5
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 5.0e-81 305.1 237 65.0
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 6.6e-81 304.7 238 64.7
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.5e-80 303.5 237 64.6
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 5.6e-80 301.6 186 76.3
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 5.6e-80 301.6 237 64.6
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 7.3e-80 301.2 244 65.2
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.5e-80 300.8 264 61.7
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 1.6e-79 300.1 237 63.3
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 2.8e-79 299.3 221 67.4
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 2.8e-79 299.3 229 65.5
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 4.7e-79 298.5 240 63.3
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 4.7e-79 298.5 219 65.8
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 6.2e-79 298.1 224 64.3
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.1e-78 297.4 186 72.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.4e-78 297.0 229 65.9
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.8e-78 296.6 236 62.3
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.8e-78 296.6 186 72.0
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.1e-78 295.8 262 61.5
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 4.0e-78 295.4 236 63.6
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 5.2e-78 295.0 223 66.8
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 8.9e-78 294.3 228 67.1
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.7e-76 290.0 236 64.0
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.7e-76 290.0 246 61.4
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.9e-76 289.3 248 59.7
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.9e-76 289.3 256 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.1e-75 287.3 206 67.0
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 2.4e-75 286.2 235 62.6
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.4e-75 286.2 238 63.4
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 5.4e-75 285.0 261 58.6
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 3.5e-74 282.3 238 60.1
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 1.3e-73 280.4 220 65.5
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.1e-71 273.1 226 58.8
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 2.3e-70 269.6 160 77.5
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 8.9e-70 267.7 238 58.0
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.3e-68 263.8 163 76.1
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 4.9e-68 261.9 241 59.8
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 3.2e-67 259.2 199 67.3
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 6.0e-66 255.0 184 60.9
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 1.7e-65 253.4 298 50.3
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 1.6e-63 246.9 148 75.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 6.2e-63 245.0 218 55.0
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 1.6e-58 230.3 183 59.6
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 6.6e-57 224.9 332 41.6
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 4.4e-53 212.2 207 51.2
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 8.4e-52 208.0 133 69.9
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 9.9e-45 184.5 129 63.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 6.2e-39 165.2 104 71.2
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 2.4e-38 163.3 104 73.1
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 2.9e-36 156.4 139 62.6
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 4.1e-22 109.4 166 38.6
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 2.0e-21 107.1 57 80.7
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.8e-20 102.8 183 26.8
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 5.0e-20 102.4 244 27.5
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 2.5e-19 100.1 184 30.4
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 9.4e-19 98.2 182 30.2
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.2e-18 97.8 182 30.2
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.7e-18 96.7 226 30.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 2.7e-18 96.7 185 29.7
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 3.6e-18 96.3 245 27.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 4.6e-18 95.9 188 28.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 6.1e-18 95.5 164 29.9
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 6.1e-18 95.5 182 27.5
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 6.1e-18 95.5 184 25.0
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 2.3e-17 93.6 185 29.2
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.5e-16 90.9 63 68.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 2.0e-16 90.5 217 28.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.3e-16 89.4 186 28.0
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 5.7e-16 89.0 185 27.6
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.7e-15 87.4 220 27.3
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 2.2e-15 87.0 185 27.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 2.2e-15 87.0 249 25.7
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 2.2e-15 87.0 220 27.3
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.8e-15 86.7 240 25.8
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 3.7e-15 86.3 249 26.9
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.8e-15 85.9 186 24.7
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 8.2e-15 85.1 185 28.6
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.4e-14 84.3 185 27.0
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.4e-14 84.3 185 27.0
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 1.8e-14 84.0 205 30.2
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.8e-14 84.0 187 27.3
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 3.1e-14 83.2 183 25.1
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 5.3e-14 82.4 244 26.2
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.2e-13 81.3 186 26.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.3e-12 77.8 165 26.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.2e-12 77.0 186 25.3
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.9e-11 73.9 253 23.7
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.6e-10 70.9 41 78.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.3e-09 67.0 131 27.5
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.9e-09 66.2 40 80.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 4.4e-08 62.8 242 23.1


User provided reference genes

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