Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p57800 Brassica napus HOM05D003092 ORTHO05D003977 7.9e-177 623.6 308 100.0
C02p58530 Brassica napus HOM05D003092 ORTHO05D041777 1.4e-67 260.8 276 58.0
C03p56820 Brassica napus HOM05D018161 ORTHO05D031784 1.4e-67 260.8 202 71.3
BolC3t17963H Brassica oleracea HOM05D018161 ORTHO05D031784 1.4e-67 260.8 202 71.3
BolC9t58603H Brassica oleracea HOM05D003092 ORTHO05D041777 1.4e-67 260.8 276 58.0
BcaC01g03039 Brassica carinata HOM05D003092 ORTHO05D031784 2.0e-55 220.3 174 68.4
Carub.0003s2237 Capsella rubella HOM05D003092 ORTHO05D003977 7.3e-29 132.1 85 74.1
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
BcaB06g26322 Brassica carinata HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
BcaC05g28095 Brassica carinata HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
A05p26630 Brassica napus HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
C05p41220 Brassica napus HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
BolC5t32860H Brassica oleracea HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
BraA05t21538Z Brassica rapa HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
CARHR098090 Cardamine hirsuta HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
Sp3g20000 Schrenkiella parvula HOM05D003092 ORTHO05D003977 9.5e-29 131.7 85 74.1
Thhalv10020563m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 1.2e-28 131.3 85 74.1
AT3G22200 Arabidopsis thaliana HOM05D003092 ORTHO05D003977 1.6e-28 131.0 85 74.1
AL3G36410 Arabidopsis lyrata HOM05D003092 ORTHO05D003977 2.3e-27 127.1 85 71.8
CANSAT64G1584 Cannabis sativa HOM05D003092 ORTHO05D003977 2.3e-27 127.1 98 65.3
CsaV3_4G007370 Cucumis sativus L. HOM05D003092 ORTHO05D003977 5.2e-27 125.9 85 69.4
Solyc07g043310.3 Solanum lycopersicum HOM05D003092 ORTHO05D003977 6.8e-27 125.6 85 69.4
Sopen07g022870 Solanum pennellii HOM05D003092 ORTHO05D003977 6.8e-27 125.6 85 69.4
PGSC0003DMG400011754 Solanum tuberosum HOM05D003092 ORTHO05D003977 6.8e-27 125.6 85 69.4
BolC2t07422H Brassica oleracea HOM05D029770 ORTHO05D107254 1.2e-26 124.8 68 92.6
arahy.Tifrunner.gnm1.ann1.K82IJI Arachis hypogaea HOM05D003092 ORTHO05D003977 1.5e-26 124.4 98 64.3
TAR629G1309 Trochodendron aralioides HOM05D003092 ORTHO05D003977 2.0e-26 124.0 98 64.3
TAR629G1366 Trochodendron aralioides HOM05D003092 ORTHO05D003977 2.0e-26 124.0 98 64.3
Aa31LG8G8760 Aethionema arabicum HOM05D003092 ORTHO05D003977 2.6e-26 123.6 85 68.2
arahy.Tifrunner.gnm1.ann1.IE54UT Arachis hypogaea HOM05D003092 ORTHO05D003977 2.6e-26 123.6 97 64.9
CiPaw.04G073100 Carya illinoinensis HOM05D003092 ORTHO05D003977 2.6e-26 123.6 85 69.4
Eucgr.K01341 Eucalyptus grandis HOM05D003092 ORTHO05D003977 2.6e-26 123.6 85 69.4
Lj3g0000609 Lotus japonicus HOM05D003092 ORTHO05D003977 2.6e-26 123.6 98 63.3
MBI18_g11470_MAGBIO Magnolia biondii HOM05D003092 ORTHO05D003977 2.6e-26 123.6 85 69.4
Atru.chr8.993 Acer truncatum HOM05D003092 ORTHO05D003977 3.4e-26 123.2 85 68.2
Nn7g38238 Nelumbo nucifera HOM05D003092 ORTHO05D003977 3.4e-26 123.2 85 69.4
Nitab4.5_0002232g0040 Nicotiana tabacum HOM05D003092 ORTHO05D003977 3.4e-26 123.2 85 68.2
Hund04375 Selenicereus undatus HOM05D003092 ORTHO05D003977 3.4e-26 123.2 85 69.4
ATR0752G155 Amborella trichopoda HOM05D003092 ORTHO05D003977 4.4e-26 122.9 85 68.2
CDE06G0430 Ceratophyllum demersum HOM05D003092 ORTHO05D003977 4.4e-26 122.9 85 68.2
Ca_11243_v3 Cicer arietinum L. HOM05D003092 ORTHO05D003977 4.4e-26 122.9 98 62.2
Oeu021138.3 Olea europaea HOM05D003092 ORTHO05D003977 4.4e-26 122.9 85 68.2
THA.LOC104803008 Tarenaya hassleriana HOM05D003092 ORTHO05D003977 4.4e-26 122.9 85 69.4
Aqoxy1G01441_Aqoxy1G01442 Aquilegia oxysepala HOM05D003092 ORTHO05D003977 5.8e-26 122.5 85 67.1
Glyma.12G022300 Glycine max HOM05D003092 ORTHO05D003977 5.8e-26 122.5 84 69.0
Sed0024474 Sechium edule HOM05D003092 ORTHO05D003977 5.8e-26 122.5 85 65.9
Migut.M00096 Erythranthe guttata HOM05D003092 ORTHO05D003977 7.5e-26 122.1 85 67.1
Os04g0614600 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 9.8e-26 121.7 85 67.1
AUR62003531 Chenopodium quinoa HOM05D003092 ORTHO05D003977 1.3e-25 121.3 85 67.1
Lalb_Chr01g0001161 Lupinus albus HOM05D003092 ORTHO05D003977 1.3e-25 121.3 98 62.2
Manes.08G069100 Manihot esculenta HOM05D003092 ORTHO05D003977 1.3e-25 121.3 84 67.9
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 1.3e-25 121.3 85 68.2
PGR142G2785 Punica granatum HOM05D003092 ORTHO05D003977 1.3e-25 121.3 85 68.2
GSVIVG01015824001 Vitis vinifera HOM05D003092 ORTHO05D003977 1.3e-25 121.3 85 67.1
EL10Ac6g15348 Beta vulgaris HOM05D003092 ORTHO05D003977 1.7e-25 120.9 85 67.1
CAN.G352.66 Capsicum annuum HOM05D003092 ORTHO05D003977 1.7e-25 120.9 85 67.1
Cfa023523 Carpinus fangiana HOM05D003092 ORTHO05D003977 1.7e-25 120.9 97 62.9
PGSC0003DMG400024275 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.7e-25 120.9 85 68.2
SGA_v2.0_scaffold73G24428 Striga asiatica HOM05D003092 ORTHO05D003977 1.7e-25 120.9 85 67.1
MSTRG.14878 Avicennia marina HOM05D003092 ORTHO05D003977 2.2e-25 120.6 85 68.2
Duzib133G0324 Durio zibethinus HOM05D003092 ORTHO05D003977 2.2e-25 120.6 85 67.1
Glyma.11G096200 Glycine max HOM05D003092 ORTHO05D003977 2.2e-25 120.6 84 67.9
Sabra06G0014400 Salix brachista HOM05D003092 ORTHO05D003977 2.2e-25 120.6 85 67.1
HPP92_014204 Vanilla planifolia HOM05D003092 ORTHO05D003977 2.2e-25 120.6 85 67.1
Cpa.g.sc8.291 Carica papaya HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 67.1
AUR62017846 Chenopodium quinoa HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 65.9
Cc05_g00030 Coffea canephora HOM05D003092 ORTHO05D003977 2.9e-25 120.2 84 67.9
Dinv18426 Davidia involucrata HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 67.1
Gohir.A08G051200 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 67.1
Gorai.004G063100 Gossypium raimondii HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 67.1
Potri.006G020900 Populus trichocarpa HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 67.1
QL04p061990 Quercus lobata HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 68.2
Thecc.01G172800 Theobroma cacao HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 67.1
TWI60G0778 Tripterygium wilfordii HOM05D003092 ORTHO05D003977 2.9e-25 120.2 85 65.9
Hma1.2p1_0758F.1_g213520 Hydrangea macrophylla HOM05D003092 ORTHO05D003977 3.7e-25 119.8 84 67.9
Phvul.011G024300 Phaseolus vulgaris HOM05D003092 ORTHO05D003977 3.7e-25 119.8 98 62.2
Sed0028086 Sechium edule HOM05D003092 ORTHO05D003977 3.7e-25 119.8 85 65.9
Sopen12g002390 Solanum pennellii HOM05D003092 ORTHO05D003977 3.7e-25 119.8 85 67.1
Zm00001eb070860 Zea mays HOM05D003092 ORTHO05D003977 3.7e-25 119.8 85 65.9
Aa31LG9G2310 Aethionema arabicum HOM05D003092 ORTHO05D003977 4.9e-25 119.4 85 65.9
Ah.03g147600 Amaranthus hybridus HOM05D003092 ORTHO05D003977 4.9e-25 119.4 85 65.9
MD09G1139200 Malus domestica HOM05D003092 ORTHO05D003977 4.9e-25 119.4 85 67.1
PSO541G1731 Papaver somniferum HOM05D003092 ORTHO05D003977 4.9e-25 119.4 84 66.7
Prupe.3G186500 Prunus persica HOM05D003092 ORTHO05D003977 4.9e-25 119.4 98 61.2
Sc03g0006060 Simmondsia chinensis HOM05D003092 ORTHO05D003977 4.9e-25 119.4 85 65.9
ECA233G1959 Erigeron canadensis HOM05D003092 ORTHO05D003977 6.4e-25 119.0 85 67.1
Psat7g179360 Pisum sativum HOM05D003092 ORTHO05D003977 6.4e-25 119.0 85 63.5
Zm00001eb430840 Zea mays HOM05D003092 ORTHO05D003977 6.4e-25 119.0 85 64.7
FAN05G2188 Fragaria x ananassa HOM05D003092 ORTHO05D003977 8.3e-25 118.6 85 65.9
Gohir.D08G060900 Gossypium hirsutum HOM05D003092 ORTHO05D003977 8.3e-25 118.6 85 65.9
Lsat_1_v5_gn_8_37700 Lactuca sativa HOM05D003092 ORTHO05D003977 8.3e-25 118.6 85 67.1
PSO675G5899 Papaver somniferum HOM05D003092 ORTHO05D003977 8.3e-25 118.6 84 66.7
Sed0019858 Sechium edule HOM05D003092 ORTHO05D003977 8.3e-25 118.6 82 65.9
CAN.G816.9 Capsicum annuum HOM05D003092 ORTHO05D003977 1.1e-24 118.2 85 65.9
FvH4_6g39530 Fragaria vesca HOM05D003092 ORTHO05D003977 1.1e-24 118.2 85 65.9
FAN14G1111 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.1e-24 118.2 85 65.9
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 1.1e-24 118.2 86 67.4
SalBow7G2525 Salvia bowleyana HOM05D003092 ORTHO05D003977 1.1e-24 118.2 85 65.9
Solyc12g006450.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.1e-24 118.2 85 65.9
VMungo1127G0189 Vigna mungo HOM05D003092 ORTHO05D003977 1.4e-24 117.9 84 66.7
Os08g0205900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.9e-24 117.5 85 65.9
TPR.G16133 Trifolium pratense HOM05D003092 ORTHO05D003977 1.9e-24 117.5 85 65.9
GSVIVG01015821001 Vitis vinifera HOM05D003092 ORTHO05D003977 1.9e-24 117.5 84 66.7
Ciclev10011509m.g Citrus clementina HOM05D003092 ORTHO05D003977 2.4e-24 117.1 85 65.9
Gohir.A11G156000 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.4e-24 117.1 85 65.9
Gohir.D11G163100 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.4e-24 117.1 85 65.9
Gorai.007G173800 Gossypium raimondii HOM05D003092 ORTHO05D003977 2.4e-24 117.1 85 65.9
Lj7C139T4 Lonicera japonica HOM05D003092 ORTHO05D003977 2.4e-24 117.1 85 64.7
Lj7C141T9 Lonicera japonica HOM05D003092 ORTHO05D003977 2.4e-24 117.1 85 64.7
Lsat_1_v5_gn_2_64281 Lactuca sativa HOM05D003092 ORTHO05D003977 3.2e-24 116.7 85 64.7
MD17G1128700 Malus domestica HOM05D003092 ORTHO05D003977 3.2e-24 116.7 85 64.7
Peaxi162Scf00047g02452 Petunia axillaris HOM05D003092 ORTHO05D003977 3.2e-24 116.7 84 65.5
Rhsim04G0084500 Rhododendron simsii HOM05D003092 ORTHO05D003977 3.2e-24 116.7 85 65.9
Zm00001eb171190 Zea mays HOM05D003092 ORTHO05D003977 3.2e-24 116.7 85 65.9
FAN02G3818 Fragaria x ananassa HOM05D003092 ORTHO05D003977 4.1e-24 116.3 85 64.7
HanXRQChr08g0214751 Helianthus annuus HOM05D003092 ORTHO05D003977 4.1e-24 116.3 85 64.7
Potri.016G018500 Populus trichocarpa HOM05D003092 ORTHO05D003977 4.1e-24 116.3 85 65.9
Duzib138G1254 Durio zibethinus HOM05D003092 ORTHO05D003977 5.4e-24 115.9 85 64.7
CSS0021585 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 7.0e-24 115.5 85 64.7
CSS0037687 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 7.0e-24 115.5 85 64.7
CANSAT64G2744 Cannabis sativa HOM05D003092 ORTHO05D003977 7.0e-24 115.5 84 65.5
Lj1C1040T2 Lonicera japonica HOM05D003092 ORTHO05D003977 7.0e-24 115.5 98 60.2
RcHm_v2.0_Chr2g0153591 Rosa chinensis HOM05D003092 ORTHO05D003977 7.0e-24 115.5 85 64.7
CsaV3_4G007380 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.2e-23 114.8 85 61.2
ECA238G0264 Erigeron canadensis HOM05D003092 ORTHO05D003977 1.2e-23 114.8 85 63.5
Lalb_Chr19g0139631 Lupinus albus HOM05D003092 ORTHO05D003977 1.2e-23 114.8 97 57.7
TPR.G35755 Trifolium pratense HOM05D003092 ORTHO05D003977 1.6e-23 114.4 85 63.5
Pp3c1_32910 Physcomitrium patens HOM05D003092 ORTHO05D003977 2.0e-23 114.0 100 57.0
SEGI_16932 Sequoiadendron giganteum HOM05D003092 ORTHO05D003977 2.0e-23 114.0 85 62.4
TPR.G21260 Trifolium pratense HOM05D003092 ORTHO05D003977 2.0e-23 114.0 85 63.5
A05p26600 Brassica napus HOM05D003092 ORTHO05D003977 3.5e-23 113.2 86 61.6
BraA05t21535Z Brassica rapa HOM05D003092 ORTHO05D003977 3.5e-23 113.2 86 61.6
Aqoxy2G02466 Aquilegia oxysepala HOM05D003092 ORTHO05D003977 4.6e-23 112.8 88 62.5
Medtr4g076100 Medicago truncatula HOM05D003092 ORTHO05D003977 4.6e-23 112.8 85 62.4
BcaB06g26323 Brassica carinata HOM05D003092 ORTHO05D003977 7.8e-23 112.1 86 61.6
CsaV3_4G032320 Cucumis sativus L. HOM05D003092 ORTHO05D003977 7.8e-23 112.1 85 60.0
Os02g0112900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.3e-22 111.3 85 60.0
Sabra16G0025300 Salix brachista HOM05D003092 ORTHO05D003977 1.3e-22 111.3 114 53.5
FAN14G2664 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.9e-22 109.8 124 49.2
CAN.G339.12 Capsicum annuum HOM05D003092 ORTHO05D003977 5.0e-22 109.4 84 60.7
MELO3C016238.2 Cucumis melo HOM05D003092 ORTHO05D003977 5.0e-22 109.4 85 58.8
CBR_g20310 Chara braunii HOM05D003092 ORTHO05D000301 1.5e-21 107.8 98 54.1
Thhalv10020531m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 1.9e-21 107.5 93 54.8
SMO115G0307 Selaginella moellendorffii HOM05D003092 ORTHO05D003977 1.9e-21 107.5 84 59.5
FvH4_6g39560 Fragaria vesca HOM05D003092 ORTHO05D003977 2.5e-21 107.1 128 46.9
DCAR_029734 Daucus carota HOM05D003092 ORTHO05D003977 4.3e-21 106.3 85 61.2
FAN09G3380 Fragaria x ananassa HOM05D003092 ORTHO05D003977 4.3e-21 106.3 96 57.3
Os04g0614500 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 7.3e-21 105.5 85 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2355 Anthoceros agrestis HOM05D003092 ORTHO05D003977 9.5e-21 105.1 98 54.1
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.6e-20 104.4 85 55.3
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 1.6e-20 104.4 85 55.3
RcHm_v2.0_Chr2g0136861 Rosa chinensis HOM05D003092 ORTHO05D003977 2.8e-20 103.6 114 48.2
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 4.7e-20 102.8 85 57.6
AUR62017844 Chenopodium quinoa HOM05D003092 ORTHO05D003977 1.1e-19 101.7 85 58.8
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.1e-19 101.7 85 57.6
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 1.1e-19 101.7 85 57.6
Pp3c6_25350 Physcomitrium patens HOM05D003092 ORTHO05D003977 2.3e-19 100.5 98 53.1
Lalb_Chr19g0139611 Lupinus albus HOM05D003092 ORTHO05D003977 4.0e-19 99.8 97 50.5
Mapoly0160s0020 Marchantia polymorpha HOM05D003092 ORTHO05D003977 1.3e-17 94.7 86 57.0
C03p56800 Brassica napus HOM05D041034 ORTHO05D040196 7.0e-16 89.0 44 97.7
BolC3t17962H Brassica oleracea HOM05D041034 ORTHO05D040196 7.0e-16 89.0 44 97.7
BolC2t07423H Brassica oleracea HOM05D041034 ORTHO05D105121 1.0e-14 85.1 44 95.5
QL04p061858 Quercus lobata HOM05D003092 ORTHO05D003977 2.5e-13 80.5 46 76.1
RcHm_v2.0_Chr4g0413181 Rosa chinensis HOM05D003092 ORTHO05D003977 9.5e-13 78.6 46 71.7
CAN.G816.10 Capsicum annuum HOM05D003092 ORTHO05D003977 2.8e-12 77.0 59 59.3
MELO3C026404.2 Cucumis melo HOM05D003092 ORTHO05D003977 3.6e-12 76.6 46 67.4
AUR62003530 Chenopodium quinoa HOM05D003092 ORTHO05D003977 6.2e-12 75.9 46 67.4
Lalb_Chr19g0139641 Lupinus albus HOM05D003092 ORTHO05D003977 1.4e-11 74.7 59 57.6
SGA_v2.0_scaffold181G39738 Striga asiatica HOM05D003092 ORTHO05D003977 5.2e-11 72.8 41 75.6
PRCOL_00000335 Prasinoderma coloniale HOM05D003092 ORTHO05D003977 7.5e-10 68.9 85 41.2
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.3e-09 68.2 46 60.9
BolC8t48820H Brassica oleracea HOM05D029770 ORTHO05D033506 6.4e-09 65.9 58 63.8
Peaxi162Scf00393g00517 Petunia axillaris HOM05D003092 ORTHO05D003977 8.3e-09 65.5 84 40.5
A07p04370 Brassica napus HOM05D029770 ORTHO05D033506 3.2e-08 63.5 58 60.3
BraA07t28230Z Brassica rapa HOM05D029770 ORTHO05D033506 3.2e-08 63.5 58 60.3
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 7.1e-08 62.4 61 60.7
DCAR_001912 Daucus carota HOM05D003092 ORTHO05D003977 9.2e-08 62.0 84 44.0
FAN02G1300 Fragaria x ananassa HOM05D003092 ORTHO05D003977 2.1e-07 60.8 114 39.5
MELO3C032583.2 Cucumis melo HOM05D003092 ORTHO05D003977 7.8e-07 58.9 84 40.5
vmacro09169 Vaccinium macrocarpon HOM05D003092 ORTHO05D003977 1.0e-06 58.5 84 44.0
MD07G1158900 Malus domestica HOM05D003092 ORTHO05D003977 1.3e-06 58.2 38 65.8
ClCG07G010930 Citrullus lanatus HOM05D003092 ORTHO05D003977 3.0e-06 57.0 84 40.5
Haze_13641 Corylus avellana HOM05D003092 ORTHO05D003977 6.6e-06 55.8 97 38.1


User provided reference genes

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