Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.6e-228 795.8 695 100.0
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.3e-139 501.1 569 90.9
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 2.7e-132 476.9 518 96.9
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 2.7e-132 476.9 518 96.9
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.0e-131 474.9 518 96.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 4.2e-125 453.0 518 94.4
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 2.3e-123 447.2 518 88.4
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.2e-119 434.9 518 91.7
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.3e-110 404.8 518 88.0
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.9e-110 403.7 518 88.0
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.9e-109 401.0 518 88.0
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 2.0e-103 380.9 518 86.3
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 3.1e-88 330.5 576 71.2
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 6.3e-81 306.2 518 78.0
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.4e-75 288.5 297 65.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.0e-75 287.0 342 68.1
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 9.8e-74 282.3 342 71.9
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.7e-73 281.6 342 71.3
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.1e-72 278.9 518 70.7
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 3.9e-70 270.4 518 74.1
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.1e-69 268.9 518 70.8
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.0e-67 262.3 517 71.0
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.8e-67 261.5 342 66.1
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 5.8e-66 256.5 518 69.9
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.8e-66 256.5 517 71.4
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 7.5e-66 256.1 518 71.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.2e-65 254.6 355 62.5
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.9e-65 254.2 518 71.4
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 6.4e-65 253.1 519 67.8
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 2.0e-63 248.1 518 70.8
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.6e-63 246.9 531 57.1
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 2.3e-62 244.6 518 72.6
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 5.0e-62 243.4 518 62.0
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.5e-61 241.9 293 59.0
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 1.6e-60 238.4 518 63.1
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.6e-60 238.4 518 68.1
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.1e-60 238.0 524 66.8
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 2.8e-60 237.7 518 68.5
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 6.2e-60 236.5 517 67.1
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 1.8e-59 235.0 295 59.7
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 4.0e-59 233.8 518 66.8
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 8.9e-59 232.6 465 72.3
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.4e-58 230.3 289 59.9
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 8.3e-57 226.1 328 60.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.1e-56 225.7 296 65.5
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.4e-56 225.3 296 67.2
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.4e-56 225.3 296 54.7
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 4.1e-56 223.8 524 66.8
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 4.1e-56 223.8 296 54.4
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 7.1e-56 223.0 464 66.6
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-56 222.6 342 60.2
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.0e-54 219.2 518 70.7
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 4.3e-53 213.8 518 66.6
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 1.6e-52 211.8 490 67.1
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.4e-51 208.8 300 51.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 4.4e-50 203.8 535 63.9
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 5.8e-50 203.4 518 64.3
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 9.9e-50 202.6 465 66.7
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.3e-49 202.2 403 76.9
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 3.8e-49 200.7 294 54.4
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 8.4e-49 199.5 317 49.2
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.4e-48 198.7 386 56.7
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 2.4e-48 198.0 519 66.1
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.2e-47 195.7 295 53.9
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.2e-47 195.7 384 54.9
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 2.7e-47 194.5 518 68.9
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 4.6e-47 193.7 515 59.0
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 7.8e-47 193.0 518 61.6
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 3.9e-46 190.7 296 60.5
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 5.1e-46 190.3 333 49.2
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 5.1e-46 190.3 294 57.8
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.1e-44 184.9 518 65.6
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 2.4e-43 181.4 226 58.4
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.2e-42 179.1 519 63.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.0e-42 178.3 519 64.4
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 2.0e-42 178.3 391 43.0
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 2.2e-41 174.9 518 60.2
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 8.4e-41 172.9 386 54.4
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.1e-40 172.6 296 48.3
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.9e-40 171.8 519 62.0
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 5.4e-40 170.2 535 57.6
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 4.6e-39 167.2 518 61.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.0e-38 166.0 382 52.1
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.1e-37 162.5 279 50.5
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.9e-37 161.8 382 48.7
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 5.6e-37 160.2 307 42.0
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 7.3e-37 159.8 297 47.5
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 7.3e-37 159.8 519 62.4
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 7.3e-37 159.8 364 45.6
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 9.6e-37 159.5 387 52.7
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.6e-36 158.7 517 61.7
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.1e-36 158.3 341 46.9
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 3.6e-36 157.5 518 62.4
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.1e-36 156.4 519 62.0
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 3.1e-35 154.5 530 53.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.0e-34 151.8 297 37.7
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 2.2e-33 148.3 522 58.0
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 4.2e-32 144.1 518 60.0
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 7.1e-32 143.3 205 59.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 2.1e-31 141.7 298 45.0
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.7e-31 141.4 289 46.7
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 6.2e-28 130.2 297 47.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 3.1e-27 127.9 148 52.0
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.0e-26 125.2 351 71.8
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 2.3e-22 111.7 243 35.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 3.9e-22 110.9 294 40.8
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.1e-21 109.4 114 63.2
BcaC05g29007 Brassica carinata HOM05D013848 ORTHO05D039476 1.2e-18 99.4 75 77.3
BcaC03g15519 Brassica carinata HOM05D013848 ORTHO05D090975 3.2e-16 91.3 75 72.0
A08p12740 Brassica napus HOM05D013848 ORTHO05D039476 4.2e-16 90.9 75 72.0
C07p42570 Brassica napus HOM05D013848 ORTHO05D007590 2.7e-15 88.2 75 90.7
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 4.8e-12 77.4 121 64.5
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 4.8e-12 77.4 121 64.5
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 4.8e-12 77.4 121 64.5
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 6.9e-11 73.6 163 33.7
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 5.9e-10 70.5 151 40.4
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 6.7e-06 57.0 77 42.9


User provided reference genes

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