Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p39560 Brassica napus HOM05D005566 ORTHO05D031888 2.5e-87 325.5 171 100.0
BcaC05g27952 Brassica carinata HOM05D005566 ORTHO05D031888 1.6e-73 279.6 152 97.4
Sp1g11360 Schrenkiella parvula HOM05D005566 ORTHO05D007534 3.3e-39 165.6 227 49.3
BcaC05g25112 Brassica carinata HOM05D005566 ORTHO05D007534 9.6e-39 164.1 235 46.8
BcaC05g25155 Brassica carinata HOM05D005566 ORTHO05D007534 1.3e-38 163.7 233 47.2
BraA06t24082Z Brassica rapa HOM05D005566 ORTHO05D007534 2.8e-38 162.5 232 47.0
Thhalv10006889m.g Eutrema salsugineum HOM05D005566 ORTHO05D007534 2.8e-38 162.5 235 47.7
AT1G12800 Arabidopsis thaliana HOM05D005566 ORTHO05D007534 9.9e-36 154.1 227 45.8
AL1G24430 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.3e-35 153.7 233 44.2
CARHR013110 Cardamine hirsuta HOM05D005566 ORTHO05D007534 1.7e-35 153.3 237 44.7
A06p08880 Brassica napus HOM05D005566 ORTHO05D007534 2.4e-34 149.4 232 45.7
BcaC03g13296 Brassica carinata HOM05D005566 ORTHO05D024311 2.1e-33 146.4 115 72.2
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 3.5e-33 145.6 219 45.2
C05p10500 Brassica napus HOM05D005566 ORTHO05D007534 1.0e-32 144.1 232 44.0
BolC5t29796H Brassica oleracea HOM05D005566 ORTHO05D007534 1.0e-32 144.1 232 44.0
Aa31LG1G1950 Aethionema arabicum HOM05D005566 ORTHO05D007534 5.1e-32 141.7 230 44.8
Carub.0001s1252 Capsella rubella HOM05D005566 ORTHO05D007534 1.9e-31 139.8 227 43.2
THA.LOC104809401 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 7.9e-25 117.9 216 37.0
THA.LOC104809657 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 1.1e-23 114.0 215 36.7
BolC5t32696H Brassica oleracea HOM05D005566 ORTHO05D031888 3.0e-16 89.4 45 100.0
C02p04270 Brassica napus HOM05D030809 ORTHO05D024311 1.1e-13 80.9 44 88.6
BolC2t06391H Brassica oleracea HOM05D030809 ORTHO05D024311 1.1e-13 80.9 44 88.6
Duzib205G0430 Durio zibethinus HOM05D005566 ORTHO05D007534 1.1e-13 80.9 190 32.1
GSVIVG01019806001 Vitis vinifera HOM05D005566 ORTHO05D007534 1.1e-13 80.9 228 31.1
Cfa012142 Carpinus fangiana HOM05D005566 ORTHO05D007534 1.8e-13 80.1 215 32.6
Haze_08893 Corylus avellana HOM05D005566 ORTHO05D007534 3.1e-13 79.3 235 31.1
Cpa.g.sc76.21 Carica papaya HOM05D005566 ORTHO05D007534 5.3e-13 78.6 221 32.1
RcHm_v2.0_Chr7g0198431 Rosa chinensis HOM05D005566 ORTHO05D007534 6.9e-13 78.2 197 34.0
Oeu049553.1 Olea europaea HOM05D005566 ORTHO05D007534 9.0e-13 77.8 234 30.8
QL12p018066 Quercus lobata HOM05D005566 ORTHO05D007534 9.0e-13 77.8 202 32.7
PSO063G1293 Papaver somniferum HOM05D005566 ORTHO05D007534 1.2e-12 77.4 212 28.8
Thecc.03G275300 Theobroma cacao HOM05D005566 ORTHO05D007534 4.5e-12 75.5 193 31.1
C08p15640 Brassica napus HOM05D005566 ORTHO05D007534 5.8e-12 75.1 55 70.9
BolC8t49191H Brassica oleracea HOM05D005566 ORTHO05D007534 5.8e-12 75.1 55 70.9
ClCG01G002940 Citrullus lanatus HOM05D005566 ORTHO05D007534 5.8e-12 75.1 210 30.0
Gohir.D12G229000 Gossypium hirsutum HOM05D005566 ORTHO05D007534 5.8e-12 75.1 193 32.6
Gorai.008G245200 Gossypium raimondii HOM05D005566 ORTHO05D007534 7.6e-12 74.7 193 32.6
COL.COLO4_34426 Corchorus olitorius HOM05D005566 ORTHO05D007534 1.7e-11 73.6 209 29.7
Dinv38972 Davidia involucrata HOM05D005566 ORTHO05D007534 1.7e-11 73.6 230 29.6
Gohir.A12G226600 Gossypium hirsutum HOM05D005566 ORTHO05D007534 1.7e-11 73.6 193 32.1
PSO782G1537 Papaver somniferum HOM05D005566 ORTHO05D007534 1.7e-11 73.6 213 29.6
TWI81G0928 Tripterygium wilfordii HOM05D005566 ORTHO05D007534 1.7e-11 73.6 219 28.3
Sed0016580 Sechium edule HOM05D005566 ORTHO05D007534 2.2e-11 73.2 214 29.9
Prupe.5G095700 Prunus persica HOM05D005566 ORTHO05D007534 2.9e-11 72.8 223 30.9
CiPaw.12G095300 Carya illinoinensis HOM05D005566 ORTHO05D007534 6.5e-11 71.6 193 32.1
CsaV3_5G003020 Cucumis sativus L. HOM05D005566 ORTHO05D007534 6.5e-11 71.6 214 29.4
HanXRQChr02g0048911 Helianthus annuus HOM05D005566 ORTHO05D007534 6.5e-11 71.6 235 28.5
FAN08G2943 Fragaria x ananassa HOM05D005566 ORTHO05D007534 8.4e-11 71.2 209 30.6
FAN13G1151 Fragaria x ananassa HOM05D005566 ORTHO05D007534 8.4e-11 71.2 217 32.3
Nn6g33532 Nelumbo nucifera HOM05D005566 ORTHO05D007534 1.4e-10 70.5 217 29.0
Hma1.2p1_1943F.1_g308460 Hydrangea macrophylla HOM05D005566 ORTHO05D007534 1.9e-10 70.1 237 27.8
Lsat_1_v5_gn_6_5820 Lactuca sativa HOM05D005566 ORTHO05D007534 1.9e-10 70.1 193 28.0
Ciclev10024399m.g Citrus clementina HOM05D005566 ORTHO05D007534 2.5e-10 69.7 194 31.4
Duzib084G0536 Durio zibethinus HOM05D005566 ORTHO05D007534 4.2e-10 68.9 189 30.2
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 4.2e-10 68.9 213 24.9
FvH4_5g01950 Fragaria vesca HOM05D005566 ORTHO05D007534 5.5e-10 68.6 216 30.6
FAN18G1004 Fragaria x ananassa HOM05D005566 ORTHO05D007534 5.5e-10 68.6 216 30.6
Atru.chr9.204 Acer truncatum HOM05D005566 ORTHO05D007534 7.1e-10 68.2 188 33.0
Lsat_1_v5_gn_3_7621 Lactuca sativa HOM05D005566 ORTHO05D007534 1.2e-09 67.4 208 26.4
FAN04G1912 Fragaria x ananassa HOM05D005566 ORTHO05D007534 1.6e-09 67.0 217 30.4
Cc08_g14350 Coffea canephora HOM05D005566 ORTHO05D007534 2.1e-09 66.6 230 27.0
MSTRG.11999 Avicennia marina HOM05D005566 ORTHO05D007534 2.7e-09 66.2 150 32.0
CSS0044378 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 2.7e-09 66.2 206 31.6
Peaxi162Scf00102g01550 Petunia axillaris HOM05D005566 ORTHO05D007534 2.7e-09 66.2 219 26.9
Migut.A00792 Erythranthe guttata HOM05D005566 ORTHO05D007534 4.6e-09 65.5 207 27.5
HanXRQChr06g0165791 Helianthus annuus HOM05D005566 ORTHO05D007534 4.6e-09 65.5 235 27.7
TAR629G1018 Trochodendron aralioides HOM05D005566 ORTHO05D007534 6.1e-09 65.1 237 29.1
CANSAT21G2631 Cannabis sativa HOM05D005566 ORTHO05D007534 7.9e-09 64.7 224 27.7
CAN.G792.89 Capsicum annuum HOM05D005566 ORTHO05D007534 7.9e-09 64.7 234 26.5
DCAR_008409 Daucus carota HOM05D005566 ORTHO05D007534 7.9e-09 64.7 173 27.7
Nitab4.5_0004032g0020 Nicotiana tabacum HOM05D005566 ORTHO05D007534 7.9e-09 64.7 241 26.1
Sopen08g003840 Solanum pennellii HOM05D005566 ORTHO05D007534 7.9e-09 64.7 225 28.0
Actinidia14546 Actinidia chinensis HOM05D005566 ORTHO05D007534 1.0e-08 64.3 226 27.4
PGR031G0987 Punica granatum HOM05D005566 ORTHO05D007534 1.0e-08 64.3 197 30.5
ECA233G6007 Erigeron canadensis HOM05D005566 ORTHO05D007534 1.3e-08 63.9 137 32.1
Eucgr.D01874 Eucalyptus grandis HOM05D005566 ORTHO05D007534 1.3e-08 63.9 201 28.9
Lj2A187T86 Lonicera japonica HOM05D005566 ORTHO05D007534 2.3e-08 63.2 200 28.5
Nitab4.5_0001200g0190 Nicotiana tabacum HOM05D005566 ORTHO05D007534 2.3e-08 63.2 251 27.9
unitig_744.g24358 Utricularia gibba HOM05D005566 ORTHO05D007534 2.3e-08 63.2 212 28.8
MELO3C005651.2 Cucumis melo HOM05D005566 ORTHO05D007534 3.9e-08 62.4 206 29.6
ECA246G0114 Erigeron canadensis HOM05D005566 ORTHO05D007534 6.7e-08 61.6 203 26.6
Ca_17550_v3 Cicer arietinum L. HOM05D005566 ORTHO05D007534 8.7e-08 61.2 205 28.8
CDE08G0014 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 1.5e-07 60.5 193 28.0
SalBow6G1897 Salvia bowleyana HOM05D005566 ORTHO05D007534 1.5e-07 60.5 211 26.5
TPR.G12738 Trifolium pratense HOM05D005566 ORTHO05D007534 1.5e-07 60.5 226 27.9
Lj4g0021136 Lotus japonicus HOM05D005566 ORTHO05D007534 1.9e-07 60.1 218 25.7
Sc22g0000210 Simmondsia chinensis HOM05D005566 ORTHO05D007534 1.9e-07 60.1 239 25.9
SGA_v2.0_scaffold253G45116 Striga asiatica HOM05D005566 ORTHO05D007534 2.5e-07 59.7 207 26.6
SalBow5G3774 Salvia bowleyana HOM05D005566 ORTHO05D007534 4.3e-07 58.9 211 25.6
Actinidia27393 Actinidia chinensis HOM05D005566 ORTHO05D007534 7.4e-07 58.2 220 26.4
Solyc08g007950.3 Solanum lycopersicum HOM05D005566 ORTHO05D007534 7.4e-07 58.2 232 25.9
Manes.02G024200 Manihot esculenta HOM05D005566 ORTHO05D007534 1.3e-06 57.4 49 63.3
Sabra03G0087800 Salix brachista HOM05D005566 ORTHO05D007534 1.6e-06 57.0 33 81.8
ATR0680G084 Amborella trichopoda HOM05D005566 ORTHO05D007534 2.2e-06 56.6 237 25.7
Potri.003G124200 Populus trichocarpa HOM05D005566 ORTHO05D007534 2.8e-06 56.2 33 81.8
Glyma.05G205700 Glycine max HOM05D005566 ORTHO05D007534 3.7e-06 55.8 61 47.5
Glyma.08G012600 Glycine max HOM05D005566 ORTHO05D007534 3.7e-06 55.8 61 47.5
Lalb_Chr09g0333291 Lupinus albus HOM05D005566 ORTHO05D007534 3.7e-06 55.8 209 23.9
CDE05G3632 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 6.3e-06 55.1 194 25.8
MD06G1077900 Malus domestica HOM05D005566 ORTHO05D007534 6.3e-06 55.1 218 28.4
Ah.12g057290 Amaranthus hybridus HOM05D005566 ORTHO05D007534 8.2e-06 54.7 209 26.8
CSS0022681 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 8.2e-06 54.7 228 27.6
VMungo0251G1600 Vigna mungo HOM05D005566 ORTHO05D007534 8.2e-06 54.7 57 42.1


User provided reference genes

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