Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 5.9e-197 690.6 346 100.0
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 3.7e-138 495.4 328 80.2
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.4e-132 476.9 338 75.7
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 3.0e-132 475.7 338 75.7
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 3.0e-132 475.7 338 75.7
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.0e-128 463.0 338 73.7
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 8.8e-124 447.6 338 72.2
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 2.6e-123 446.0 338 70.4
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.8e-122 442.6 338 70.7
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 3.4e-120 435.6 343 69.7
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.1e-117 426.4 339 68.7
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 1.7e-114 416.8 339 67.6
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.2e-107 394.0 337 64.4
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.4e-105 386.3 340 62.6
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.9e-73 280.4 352 47.4
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 7.3e-70 268.5 356 44.9
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 4.0e-68 262.7 343 45.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 8.9e-68 261.5 351 44.2
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 2.0e-67 260.4 352 46.3
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 3.4e-67 259.6 352 44.6
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 9.9e-67 258.1 352 44.0
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 1.3e-66 257.7 343 44.9
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 2.9e-66 256.5 351 45.9
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 3.7e-66 256.1 354 45.2
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 6.4e-66 255.4 353 44.5
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.1e-65 254.6 358 44.1
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.9e-65 253.8 345 44.1
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.9e-65 253.8 355 44.2
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 3.2e-65 253.1 353 44.5
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 3.2e-65 253.1 350 43.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 4.1e-65 252.7 345 46.4
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 4.1e-65 252.7 353 44.2
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 4.1e-65 252.7 341 44.9
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 5.4e-65 252.3 352 44.9
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.2e-64 251.1 343 42.9
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.2e-64 251.1 354 43.5
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 2.1e-64 250.4 351 43.6
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 2.1e-64 250.4 353 43.3
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.7e-64 250.0 352 44.0
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 3.5e-64 249.6 346 45.7
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 4.6e-64 249.2 351 43.9
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 7.8e-64 248.4 353 43.6
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 7.8e-64 248.4 353 43.6
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 7.8e-64 248.4 357 44.3
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 1.0e-63 248.1 353 43.3
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.7e-63 247.3 345 43.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.7e-63 247.3 353 42.8
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 3.0e-63 246.5 346 43.4
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 3.9e-63 246.1 346 43.1
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 5.1e-63 245.7 349 44.4
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 6.6e-63 245.4 351 43.3
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 6.6e-63 245.4 356 43.5
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.6e-63 245.4 357 41.7
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 8.6e-63 245.0 354 42.9
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.5e-62 244.2 344 45.1
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 2.5e-62 243.4 346 43.1
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.3e-62 243.0 342 43.9
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 5.6e-62 242.3 356 43.8
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.2e-61 241.1 357 42.6
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.2e-61 241.1 346 43.1
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.6e-61 240.7 353 42.2
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.6e-61 240.7 355 41.7
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 1.6e-61 240.7 387 40.6
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.1e-61 240.4 353 42.8
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 4.7e-61 239.2 333 44.4
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 8.1e-61 238.4 347 42.1
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.4e-60 237.7 359 42.9
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.8e-60 237.3 316 44.6
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.8e-60 235.3 387 40.1
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 8.9e-60 235.0 311 47.3
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 8.9e-60 235.0 349 43.0
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 8.9e-60 235.0 354 42.4
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 8.9e-60 235.0 351 44.2
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 1.5e-59 234.2 343 44.3
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.9e-58 229.9 351 41.0
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 8.4e-58 228.4 351 41.3
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.9e-57 227.3 353 41.9
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 2.1e-56 223.8 352 41.2
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.1e-56 223.8 324 44.1
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 6.0e-56 222.2 353 40.8
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 6.0e-56 222.2 342 41.5
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.0e-55 221.5 352 40.9
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.3e-55 221.1 354 40.4
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 8.7e-55 218.4 356 40.2
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.5e-54 217.6 352 40.3
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.3e-54 216.5 351 41.0
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.2e-53 214.5 198 59.6
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.6e-53 214.2 350 39.7
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 4.7e-53 212.6 356 40.7
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.3e-50 204.5 329 39.2
C02p22550 Brassica napus HOM05D002270 ORTHO05D002866 4.9e-50 202.6 108 96.3
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.7e-47 194.1 352 40.3
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 8.7e-47 191.8 316 40.2
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 9.6e-46 188.3 356 36.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.3e-45 188.0 336 35.4
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 1.7e-42 177.6 357 35.3
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 6.4e-42 175.6 358 35.5
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 5.4e-41 172.6 333 37.8
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 2.1e-40 170.6 254 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 3.5e-40 169.9 355 34.1
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 5.1e-39 166.0 366 32.2
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 1.8e-36 157.5 326 34.7
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 4.2e-33 146.4 97 68.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.2e-32 144.8 389 30.1
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 7.9e-32 142.1 213 45.1
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.5e-30 137.9 188 47.3
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 1.1e-28 131.7 96 63.5
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 1.4e-28 131.3 188 46.8
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 9.0e-28 128.6 237 40.1
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 1.5e-27 127.9 82 67.1
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 2.6e-27 127.1 174 46.0
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 5.8e-27 125.9 106 55.7
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 5.8e-27 125.9 188 45.7
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 4.6e-24 116.3 78 65.4
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 5.1e-23 112.8 188 39.9
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 5.1e-23 112.8 137 46.0
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.5e-22 110.5 196 37.8
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 9.7e-22 108.6 100 47.0
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 3.1e-20 103.6 78 59.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 3.1e-20 103.6 183 39.3
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 4.1e-20 103.2 115 45.2
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 6.9e-20 102.4 57 82.5
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.3e-18 98.2 178 40.4
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.3e-18 98.2 178 40.4
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 1.7e-18 97.8 102 56.9
BolC5t32606H Brassica oleracea HOM05D002270 ORTHO05D002866 9.4e-17 92.0 42 100.0
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 3.6e-16 90.1 60 63.3
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 3.6e-16 90.1 73 68.5
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.8e-15 87.8 322 28.0
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 6.9e-12 75.9 161 35.4
AagrBONN_evm.TU.Sc2ySwM_117.1507 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.5e-11 74.7 154 33.8
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 2.6e-11 73.9 53 60.4
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.9e-10 70.5 338 23.7
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 5.0e-10 69.7 335 24.2
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 8.5e-10 68.9 327 25.7
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.4e-09 68.2 330 24.8
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.9e-09 67.8 320 25.0
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 2.5e-09 67.4 105 37.1
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 2.5e-09 67.4 105 37.1
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 4.2e-09 66.6 52 69.2
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.1e-08 64.3 335 23.9
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 3.0e-07 60.5 35 80.0
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 1.5e-06 58.2 87 33.3


User provided reference genes

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