Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p38600 Brassica napus HOM05D002270 ORTHO05D016129 1.1e-289 999.2 502 100.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.3e-229 799.7 579 74.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 2.9e-229 798.5 579 74.4
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.5e-228 796.2 579 74.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 3.2e-228 795.0 579 74.3
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.1e-198 696.0 582 67.0
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 8.1e-195 684.1 580 64.1
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.1e-191 673.7 582 63.2
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.7e-190 669.1 577 63.3
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 5.1e-189 664.8 578 63.5
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 6.9e-186 654.4 476 72.9
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 7.6e-185 651.0 579 62.2
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 7.1e-175 617.8 637 57.0
BolC5t32598H Brassica oleracea HOM05D002270 ORTHO05D016129 3.0e-133 479.6 272 90.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.6e-132 476.5 581 49.1
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.4e-130 470.7 576 48.1
BolC5t32599H Brassica oleracea HOM05D002270 ORTHO05D002866 1.6e-126 457.2 233 99.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 4.7e-118 429.1 247 89.9
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 2.1e-78 297.4 583 35.3
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 6.2e-78 295.8 584 34.4
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.8e-77 294.3 568 35.7
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 5.8e-76 289.3 586 33.6
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 3.8e-75 286.6 574 34.0
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 5.1e-72 276.2 602 33.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 8.7e-72 275.4 581 33.4
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 3.3e-71 273.5 585 33.3
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 9.6e-71 271.9 588 33.0
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.6e-70 271.2 579 31.1
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.1e-70 270.8 565 34.9
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.4e-69 268.1 578 33.2
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.9e-69 265.8 587 31.9
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.2e-68 265.0 563 31.4
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 3.4e-68 263.5 578 33.6
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.4e-68 263.1 578 33.9
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.4e-68 263.1 578 32.5
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 4.4e-68 263.1 572 32.0
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 5.4e-66 256.1 585 31.8
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 7.1e-66 255.8 592 31.9
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 6.6e-64 249.2 603 30.8
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 8.7e-64 248.8 575 31.1
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.5e-63 247.3 582 30.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.3e-62 245.0 569 31.6
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 3.6e-62 243.4 575 32.7
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 9.0e-61 238.8 578 32.2
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 9.0e-61 238.8 560 31.2
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.5e-60 238.0 582 29.6
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 4.9e-59 233.0 607 29.5
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 6.4e-59 232.6 585 29.6
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 8.4e-59 232.3 599 30.2
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 3.2e-58 230.3 564 29.4
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.2e-57 228.4 592 29.7
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 6.0e-57 226.1 609 28.9
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 7.9e-57 225.7 574 30.5
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 7.9e-57 225.7 583 29.5
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.3e-56 224.2 610 28.5
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.9e-56 223.4 499 32.1
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 5.1e-56 223.0 576 28.3
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-55 221.9 571 30.6
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 9.6e-55 218.8 567 29.8
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 3.7e-54 216.9 601 27.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 4.8e-54 216.5 550 30.5
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.1e-53 215.3 590 28.6
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 7.6e-52 209.1 573 32.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.2e-51 207.6 585 29.4
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 3.8e-51 206.8 591 28.9
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 2.5e-50 204.1 608 28.1
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 4.2e-50 203.4 610 29.3
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 4.2e-50 203.4 588 29.6
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.7e-49 200.7 579 28.2
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.6e-49 199.9 549 29.5
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 7.9e-49 199.1 576 27.6
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.3e-48 197.6 573 28.3
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 3.9e-48 196.8 573 27.1
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 3.9e-48 196.8 503 31.6
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 6.7e-48 196.1 594 25.9
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.1e-47 195.3 549 29.5
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.1e-47 195.3 578 29.2
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.5e-47 194.1 629 27.3
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 4.3e-47 193.4 549 29.3
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 9.6e-47 192.2 593 29.8
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.1e-46 191.0 594 28.8
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 2.8e-46 190.7 566 29.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 6.2e-46 189.5 529 28.5
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.1e-45 188.7 547 28.5
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 6.9e-45 186.0 568 28.7
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.2e-44 185.3 569 29.3
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.5e-44 184.9 563 29.0
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 2.0e-44 184.5 568 29.9
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 7.6e-44 182.6 592 28.4
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 1.0e-43 182.2 478 31.8
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 2.2e-43 181.0 564 29.1
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.8e-43 180.3 565 29.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 8.4e-43 179.1 518 28.8
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.5e-42 177.6 560 28.2
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 3.2e-42 177.2 591 28.1
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 5.1e-40 169.9 577 28.1
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 3.3e-39 167.2 264 40.9
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 3.3e-39 167.2 600 27.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 6.3e-38 162.9 585 26.7
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.0e-36 157.9 535 28.0
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.5e-31 141.0 275 32.4
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 7.4e-31 139.4 588 25.0
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.2e-30 137.9 558 26.3
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 3.7e-30 137.1 574 25.4
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.1e-29 135.6 525 27.0
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 9.7e-23 112.5 250 28.8
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 9.1e-21 105.9 216 37.0
TPR.G27589 Trifolium pratense HOM05D002270 ORTHO05D016129 3.2e-18 97.4 191 34.0
MBI15_g37229_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 1.4e-13 82.0 92 47.8
SEGI_14766 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.2e-10 70.5 215 27.0
QL93p0356_0058 Quercus lobata HOM05D002270 ORTHO05D002866 7.2e-10 69.7 67 47.8
MBI18_g43595_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 4.7e-09 67.0 58 55.2
Glyma.19G039050 Glycine max HOM05D002270 ORTHO05D016129 3.0e-08 64.3 129 34.1
MBI18_g29805_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 4.0e-08 63.9 64 51.6
MBI05_g22669_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 6.8e-08 63.2 58 53.4


User provided reference genes

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