Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p33820 Brassica napus HOM05D000836 ORTHO05D042716 1.4e-59 233.4 181 100.0
BolC5t32115H Brassica oleracea HOM05D000836 ORTHO05D042716 2.6e-58 229.2 181 95.6
A05p12910 Brassica napus HOM05D000836 ORTHO05D000709 2.0e-42 176.4 196 65.3
C04p16930 Brassica napus HOM05D000836 ORTHO05D000709 2.6e-42 176.0 196 64.8
BolC4t23252H Brassica oleracea HOM05D000836 ORTHO05D000709 2.6e-42 176.0 196 64.8
BcaC02g11353 Brassica carinata HOM05D000836 ORTHO05D000709 4.4e-42 175.3 195 65.6
BraA05t20231Z Brassica rapa HOM05D000836 ORTHO05D000709 2.4e-40 169.5 197 64.0
BcaB02g10491 Brassica carinata HOM05D000836 ORTHO05D000709 9.2e-40 167.5 198 66.2
Thhalv10016303m.g Eutrema salsugineum HOM05D000836 ORTHO05D000709 5.9e-39 164.9 197 62.9
C04p62300 Brassica napus HOM05D000836 ORTHO05D000709 8.0e-36 154.5 201 59.2
Aa31LG5G4350 Aethionema arabicum HOM05D000836 ORTHO05D000709 1.8e-35 153.3 198 56.6
AL4G28140 Arabidopsis lyrata HOM05D000836 ORTHO05D000709 8.9e-35 151.0 200 57.0
AT2G32700 Arabidopsis thaliana HOM05D000836 ORTHO05D000709 1.5e-34 150.2 199 57.3
Carub.0004s1406 Capsella rubella HOM05D000836 ORTHO05D000709 7.5e-34 147.9 198 59.1
BolC5t32153H Brassica oleracea HOM05D000836 ORTHO05D000709 1.9e-32 143.3 136 90.4
CARHR126590 Cardamine hirsuta HOM05D000836 ORTHO05D000709 2.4e-32 142.9 198 57.6
BolC3t14513H Brassica oleracea HOM05D000836 ORTHO05D000709 3.2e-32 142.5 195 57.4
THA.LOC104801044 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 5.4e-32 141.7 199 53.3
BraA03t11086Z Brassica rapa HOM05D000836 ORTHO05D000709 2.0e-31 139.8 198 55.6
A03p18260 Brassica napus HOM05D000836 ORTHO05D000709 2.7e-31 139.4 197 56.3
C03p21310 Brassica napus HOM05D000836 ORTHO05D000709 3.5e-31 139.0 197 56.3
BcaC01g05896 Brassica carinata HOM05D000836 ORTHO05D000709 4.6e-31 138.7 197 56.3
Aa31LG1G20090 Aethionema arabicum HOM05D002511 ORTHO05D000709 2.3e-30 136.3 198 54.0
BcaB01g03965 Brassica carinata HOM05D000836 ORTHO05D000709 8.0e-28 127.9 198 55.1
BcaB06g28627 Brassica carinata HOM05D000836 ORTHO05D000709 3.1e-27 125.9 201 52.2
Cpa.g.sc59.128 Carica papaya HOM05D000836 ORTHO05D000709 4.9e-25 118.6 198 42.4
Sp4g15040 Schrenkiella parvula HOM05D000836 ORTHO05D000709 1.9e-24 116.7 198 48.0
BcaB01g03957 Brassica carinata HOM05D001358 ORTHO05D001154 3.2e-24 115.9 175 47.4
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 2.7e-23 112.8 198 46.0
COL.COLO4_10279 Corchorus olitorius HOM05D000836 ORTHO05D000709 4.6e-23 112.1 197 42.1
Gorai.005G131200 Gossypium raimondii HOM05D000836 ORTHO05D000709 4.6e-23 112.1 196 40.3
Duzib268G1331 Durio zibethinus HOM05D000836 ORTHO05D000709 7.8e-23 111.3 197 41.6
CiPaw.02G067000 Carya illinoinensis HOM05D000836 ORTHO05D000709 1.0e-22 110.9 198 40.9
Gorai.011G159400 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.7e-22 110.2 196 40.3
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 3.9e-22 109.0 198 40.4
Thecc.04G205800 Theobroma cacao HOM05D000836 ORTHO05D000709 8.6e-22 107.8 197 42.1
Haze_11597 Corylus avellana HOM05D000836 ORTHO05D000709 2.5e-21 106.3 218 37.6
Gohir.D02G123100 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.5e-21 106.3 196 40.3
Medtr1g050340 Medicago truncatula HOM05D000836 ORTHO05D000709 2.5e-21 106.3 199 39.2
Gohir.D10G142600 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.2e-20 104.0 196 39.8
Sed0006740 Sechium edule HOM05D000836 ORTHO05D000709 1.2e-20 104.0 195 40.5
Gohir.A03G093900 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.8e-20 102.8 196 39.3
Glyma.10G102400 Glycine max HOM05D000836 ORTHO05D000709 3.6e-20 102.4 199 40.2
Eucgr.H00067 Eucalyptus grandis HOM05D000836 ORTHO05D000709 8.1e-20 101.3 196 43.9
Phvul.007G244700 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 1.1e-19 100.9 199 38.7
MD04G1005500 Malus domestica HOM05D000836 ORTHO05D000709 2.3e-19 99.8 188 43.6
Manes.03G148800 Manihot esculenta HOM05D000836 ORTHO05D000709 2.3e-19 99.8 197 41.6
Lalb_Chr01g0010231 Lupinus albus HOM05D000836 ORTHO05D000709 3.1e-19 99.4 199 38.7
MELO3C006318.2 Cucumis melo HOM05D000836 ORTHO05D000709 4.0e-19 99.0 195 39.0
TPR.G7604 Trifolium pratense HOM05D000836 ORTHO05D000709 5.2e-19 98.6 198 40.4
ClCG05G003390 Citrullus lanatus HOM05D000836 ORTHO05D000709 6.8e-19 98.2 195 41.0
Prupe.1G005700 Prunus persica HOM05D000836 ORTHO05D000709 6.8e-19 98.2 194 38.7
Ciclev10004358m.g Citrus clementina HOM05D000836 ORTHO05D000709 2.0e-18 96.7 198 45.5
Lj1g0022487 Lotus japonicus HOM05D000836 ORTHO05D000709 2.0e-18 96.7 199 39.2
Aqoxy5G00074 Aquilegia oxysepala HOM05D000836 ORTHO05D000709 2.6e-18 96.3 207 44.9
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 4.4e-18 95.5 194 39.7
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 5.8e-18 95.1 199 40.2
C05p34220 Brassica napus HOM05D000120 ORTHO05D000068 1.3e-17 94.0 133 76.7
Glyma.02G164700 Glycine max HOM05D000836 ORTHO05D000709 2.2e-17 93.2 199 37.2
Potri.003G178600 Populus trichocarpa HOM05D000836 ORTHO05D000709 2.2e-17 93.2 198 39.4
FAN22G1004 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.9e-17 92.8 193 40.9
FAN12G4032 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.4e-17 91.7 193 40.9
RcHm_v2.0_Chr4g0385971 Rosa chinensis HOM05D000836 ORTHO05D000709 8.3e-17 91.3 193 36.8
Atru.chr4.1725 Acer truncatum HOM05D000836 ORTHO05D000709 1.4e-16 90.5 200 45.0
FAN17G0254 Fragaria x ananassa HOM05D000836 ORTHO05D000709 1.4e-16 90.5 193 36.3
MBI10_g18939_MAGBIO Magnolia biondii HOM05D000836 ORTHO05D000709 4.1e-16 89.0 216 41.2
PGR142G1073 Punica granatum HOM05D000836 ORTHO05D000709 4.1e-16 89.0 198 41.4
FvH4_4g00520 Fragaria vesca HOM05D000836 ORTHO05D000709 5.4e-16 88.6 193 40.4
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 1.6e-15 87.0 197 36.0
Duzib151G0556 Durio zibethinus HOM05D000836 ORTHO05D000709 1.3e-14 84.0 197 38.1
SGA_v2.0_scaffold8G04645 Striga asiatica HOM05D000836 ORTHO05D000709 1.3e-14 84.0 181 36.5
SGA_v2.0_scaffold1G00745 Striga asiatica HOM05D000836 ORTHO05D000709 1.7e-14 83.6 181 36.5
Psat6g130000 Pisum sativum HOM05D000836 ORTHO05D000709 1.1e-13 80.9 93 53.8
GSVIVG01028646001 Vitis vinifera HOM05D000836 ORTHO05D000709 2.5e-13 79.7 194 44.3
Migut.D00533 Erythranthe guttata HOM05D000836 ORTHO05D000709 3.3e-13 79.3 192 44.8
Ca_26499_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 5.6e-13 78.6 93 58.1
Ca_29745_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 5.6e-13 78.6 93 58.1
MBI07_g31313_MAGBIO Magnolia biondii HOM05D000836 ORTHO05D000709 5.6e-13 78.6 210 34.8
PSO170G6221 Papaver somniferum HOM05D000836 ORTHO05D000709 7.3e-13 78.2 209 34.4
Manes.15G052600 Manihot esculenta HOM05D000836 ORTHO05D000709 9.6e-13 77.8 92 52.2
MSTRG.21421 Avicennia marina HOM05D000836 ORTHO05D000709 1.6e-12 77.0 191 49.2
CSS0023634 Camellia sinensis var. sinensis HOM05D000836 ORTHO05D000709 1.6e-12 77.0 188 44.7
CSS0049393 Camellia sinensis var. sinensis HOM05D000836 ORTHO05D000709 1.6e-12 77.0 188 44.7
CiPaw.03G150200 Carya illinoinensis HOM05D000836 ORTHO05D000709 2.1e-12 76.6 189 45.5
SalBow2G2753 Salvia bowleyana HOM05D000836 ORTHO05D000709 2.1e-12 76.6 188 44.7
Manes.13G045500 Manihot esculenta HOM05D000836 ORTHO05D000709 3.6e-12 75.9 191 34.0
Sabra02G0184200 Salix brachista HOM05D000836 ORTHO05D000709 3.6e-12 75.9 191 42.4
TAR636G0232 Trochodendron aralioides HOM05D000836 ORTHO05D000709 4.7e-12 75.5 220 39.5
PSO674G0107 Papaver somniferum HOM05D000836 ORTHO05D000709 8.1e-12 74.7 209 34.0
Peaxi162Scf00107g00176 Petunia axillaris HOM05D000836 ORTHO05D000709 8.1e-12 74.7 181 35.9
Potri.002G241800 Populus trichocarpa HOM05D000836 ORTHO05D000709 1.8e-11 73.6 190 43.7
Prupe.8G203500 Prunus persica HOM05D000836 ORTHO05D000709 2.4e-11 73.2 192 43.2
Glyma.18G171100 Glycine max HOM05D000836 ORTHO05D000709 3.1e-11 72.8 190 50.5
Oeu009725.1 Olea europaea HOM05D000836 ORTHO05D000709 6.8e-11 71.6 92 48.9
Duzib133G0531 Durio zibethinus HOM05D000836 ORTHO05D000709 1.2e-10 70.9 196 41.3
Nn1g07846 Nelumbo nucifera HOM05D000836 ORTHO05D000709 1.2e-10 70.9 200 44.0
HanXRQChr10g0279751 Helianthus annuus HOM05D000836 ORTHO05D000709 1.5e-10 70.5 182 46.7
QL09p054646 Quercus lobata HOM05D000836 ORTHO05D000709 2.0e-10 70.1 194 44.8
Lalb_Chr12g0209701 Lupinus albus HOM05D000836 ORTHO05D000709 2.6e-10 69.7 195 42.6
Nitab4.5_0006192g0020 Nicotiana tabacum HOM05D000836 ORTHO05D000709 3.4e-10 69.3 87 50.6
Peaxi162Scf00517g00513 Petunia axillaris HOM05D000836 ORTHO05D000709 3.4e-10 69.3 190 47.4
Sopen09g024030 Solanum pennellii HOM05D000836 ORTHO05D000709 3.4e-10 69.3 87 50.6
PGSC0003DMG400017653 Solanum tuberosum HOM05D000836 ORTHO05D000709 3.4e-10 69.3 87 50.6
vmacro14755 Vaccinium macrocarpon HOM05D000836 ORTHO05D000709 3.4e-10 69.3 88 50.0
Oeu022256.1 Olea europaea HOM05D000836 ORTHO05D000709 4.4e-10 68.9 191 41.9
unitig_8.g3756 Utricularia gibba HOM05D000836 ORTHO05D000709 4.4e-10 68.9 189 48.7
Actinidia09484 Actinidia chinensis HOM05D000836 ORTHO05D000709 5.8e-10 68.6 187 47.6
Solyc09g061290.3 Solanum lycopersicum HOM05D000836 ORTHO05D000709 5.8e-10 68.6 87 49.4
TAR365G0060 Trochodendron aralioides HOM05D000836 ORTHO05D000709 7.6e-10 68.2 94 48.9
unitig_22.g5306 Utricularia gibba HOM05D000836 ORTHO05D000709 7.6e-10 68.2 189 44.4
Psat3g144760 Pisum sativum HOM05D000836 ORTHO05D000709 9.9e-10 67.8 195 53.8
HPP92_020753 Vanilla planifolia HOM05D000836 ORTHO05D000709 9.9e-10 67.8 93 48.4
Ciclev10023309m.g Citrus clementina HOM05D000836 ORTHO05D000709 1.7e-09 67.0 196 40.3
CsaV3_3G011040 Cucumis sativus L. HOM05D000836 ORTHO05D000709 2.2e-09 66.6 195 32.3
Sabra01G0034200 Salix brachista HOM05D000836 ORTHO05D000709 2.9e-09 66.2 193 35.2
CAN.G122.3 Capsicum annuum HOM05D000836 ORTHO05D000709 3.8e-09 65.9 181 44.2
Glyma.08G354500 Glycine max HOM05D000836 ORTHO05D000709 3.8e-09 65.9 191 51.8
Medtr7g058460 Medicago truncatula HOM05D000836 ORTHO05D000709 6.4e-09 65.1 194 41.2
Lsat_1_v5_gn_5_179300 Lactuca sativa HOM05D000836 ORTHO05D000709 8.4e-09 64.7 200 43.0
BolC4t27703H Brassica oleracea HOM05D000836 ORTHO05D000709 1.1e-08 64.3 48 66.7
ECA248G0109 Erigeron canadensis HOM05D000836 ORTHO05D000709 1.1e-08 64.3 194 49.5
Medtr7g058440 Medicago truncatula HOM05D000836 ORTHO05D000709 1.1e-08 64.3 194 37.1
Nitab4.5_0000045g0120 Nicotiana tabacum HOM05D000836 ORTHO05D000709 1.4e-08 63.9 89 49.4
HanXRQChr00c0028g0571141 Helianthus annuus HOM05D000836 ORTHO05D000709 1.9e-08 63.5 200 46.5
Lj1C85G3 Lonicera japonica HOM05D000836 ORTHO05D000709 1.9e-08 63.5 88 46.6
Hma1.2p1_0351F.1_g132890 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 2.4e-08 63.2 87 48.3
BcaC02g07892 Brassica carinata HOM05D000836 ORTHO05D000709 3.2e-08 62.8 47 66.0
Phvul.008G125400 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 3.2e-08 62.8 195 41.5
Thecc.01G226600 Theobroma cacao HOM05D000836 ORTHO05D000709 3.2e-08 62.8 93 45.2
Gorai.001G234100 Gossypium raimondii HOM05D000836 ORTHO05D000709 4.2e-08 62.4 186 43.5
CDE08G0329 Ceratophyllum demersum HOM05D000836 ORTHO05D000709 5.4e-08 62.0 205 40.0
TWI73G0286 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 7.1e-08 61.6 198 40.4
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 1.2e-07 60.8 48 64.6
CDE02G2853 Ceratophyllum demersum HOM05D000836 ORTHO05D000709 2.7e-07 59.7 212 31.6
FvH4_2g19160 Fragaria vesca HOM05D000836 ORTHO05D000709 2.7e-07 59.7 189 46.0
FAN24G1148 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.7e-07 59.7 189 46.0
FAN15G3190 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.0e-07 58.5 189 46.0
Gorai.007G154000 Gossypium raimondii HOM05D000836 ORTHO05D000709 7.8e-07 58.2 91 42.9
Nitab4.5_0012093g0010 Nicotiana tabacum HOM05D000836 ORTHO05D000709 7.8e-07 58.2 214 41.1
Sabra03G0130900 Salix brachista HOM05D000836 ORTHO05D000709 7.8e-07 58.2 151 33.1
ECA247G1726 Erigeron canadensis HOM05D000836 ORTHO05D000709 1.0e-06 57.8 181 40.3
RcHm_v2.0_Chr6g0284941 Rosa chinensis HOM05D000836 ORTHO05D000709 1.0e-06 57.8 193 43.5
TWI53G1423 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 1.0e-06 57.8 196 40.3
FAN27G2627 Fragaria x ananassa HOM05D000836 ORTHO05D000709 1.3e-06 57.4 189 45.5
Potri.001G049400 Populus trichocarpa HOM05D000836 ORTHO05D000709 1.3e-06 57.4 191 33.5
Nitab4.5_0003866g0030 Nicotiana tabacum HOM05D000836 ORTHO05D000709 1.7e-06 57.0 218 33.9
MD05G1176000 Malus domestica HOM05D000836 ORTHO05D000709 2.3e-06 56.6 191 45.5
Duzib138G1320 Durio zibethinus HOM05D000836 ORTHO05D000709 3.9e-06 55.8 93 44.1
Solyc06g083460.4 Solanum lycopersicum HOM05D000836 ORTHO05D000709 3.9e-06 55.8 185 33.5


User provided reference genes

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