Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 4.6e-178 627.9 336 100.0
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 4.0e-174 614.8 335 97.6
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 4.0e-174 614.8 335 97.6
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 7.1e-171 604.0 335 97.0
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.1e-166 590.1 368 88.9
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 3.4e-165 585.1 332 94.0
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.4e-163 579.7 330 94.2
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-163 579.7 339 93.5
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 4.2e-163 578.2 333 93.4
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 5.5e-163 577.8 334 93.7
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 1.6e-162 576.2 330 93.6
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.6e-162 576.2 330 93.6
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 2.1e-162 575.9 330 93.6
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 7.9e-162 573.9 332 93.4
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.1e-158 563.5 332 91.6
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 3.2e-155 552.0 310 94.2
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.8e-153 546.2 312 94.6
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 7.7e-149 530.8 327 85.3
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 4.5e-141 505.0 295 90.2
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.5e-133 478.8 328 75.9
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.9e-131 473.0 341 75.1
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 2.5e-131 472.6 331 75.5
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.1e-130 469.5 333 75.1
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 2.7e-130 469.2 333 74.5
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 8.0e-130 467.6 336 73.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.0e-129 467.2 333 74.2
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.2e-129 464.9 333 74.2
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.1e-128 463.8 336 73.8
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.5e-128 463.4 329 74.8
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 4.4e-128 461.8 335 74.0
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 5.7e-128 461.5 340 71.8
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 9.7e-128 460.7 332 72.6
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 1.3e-127 460.3 330 73.6
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.7e-127 458.8 335 73.1
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.1e-126 457.2 329 74.2
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.4e-126 456.1 330 73.0
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 5.3e-126 454.9 337 72.7
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 5.3e-126 454.9 332 73.5
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 9.1e-126 454.1 329 72.0
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 3.5e-125 452.2 334 73.4
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 5.9e-125 451.4 330 72.4
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 5.9e-125 451.4 332 70.2
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 7.7e-125 451.1 330 72.1
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.0e-124 450.7 332 72.9
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.2e-124 449.5 333 71.8
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 2.9e-124 449.1 332 72.3
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 2.9e-124 449.1 331 71.0
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 2.9e-124 449.1 333 72.4
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 5.0e-124 448.4 339 70.2
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.1e-123 447.2 332 70.8
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.5e-123 446.8 338 71.6
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 2.5e-123 446.0 336 71.4
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 4.2e-123 445.3 330 71.8
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.1e-122 443.0 337 71.5
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 2.1e-122 443.0 341 70.7
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.4e-121 440.3 332 71.4
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 4.0e-121 438.7 331 70.7
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 5.2e-121 438.3 341 71.0
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.7e-119 433.3 313 73.2
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 6.3e-119 431.4 335 67.5
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 8.3e-119 431.0 302 74.2
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 2.4e-118 429.5 332 69.3
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 4.1e-118 428.7 334 68.6
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 4.1e-118 428.7 333 68.2
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 5.3e-118 428.3 370 64.1
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 7.0e-118 427.9 329 69.9
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.6e-117 426.8 300 75.0
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.0e-117 426.4 346 67.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 5.9e-117 424.9 302 73.5
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 7.7e-117 424.5 302 73.5
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 2.9e-116 422.5 337 68.0
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 5.0e-116 421.8 342 67.0
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.6e-114 416.8 334 65.3
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.6e-114 415.6 330 68.2
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 6.1e-114 414.8 372 64.0
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.1e-114 414.8 325 70.2
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.1e-114 414.8 330 68.2
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 8.0e-114 414.5 338 66.9
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 1.4e-113 413.7 345 67.5
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.8e-113 413.3 274 78.1
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.8e-113 413.3 352 65.9
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 2.3e-113 412.9 316 71.2
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.0e-113 412.5 364 63.7
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 7.5e-112 407.9 328 67.4
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.7e-111 406.8 332 67.2
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 2.2e-111 406.4 328 67.1
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.4e-110 403.7 338 65.4
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 2.4e-110 402.9 360 64.7
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 4.5e-109 398.7 402 59.0
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 5.9e-109 398.3 342 63.2
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 6.6e-108 394.8 312 66.0
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.5e-107 393.7 274 74.8
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.2e-107 392.1 326 66.3
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 9.5e-107 391.0 331 64.0
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 3.4e-104 382.5 283 70.7
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 2.8e-103 379.4 302 69.2
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 3.5e-101 372.5 267 73.8
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.5e-99 367.1 302 63.9
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 2.5e-99 366.3 339 58.7
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 2.8e-98 362.8 316 62.3
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 4.1e-94 349.0 196 93.9
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 2.0e-93 346.7 243 76.1
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 7.8e-93 344.7 307 63.2
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.0e-92 344.4 337 59.6
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.3e-92 343.2 274 67.5
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 3.3e-91 339.3 217 79.7
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.2e-90 337.4 250 68.0
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 4.0e-89 332.4 302 57.3
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 7.5e-88 328.2 201 89.1
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.7e-87 327.0 298 56.7
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 2.4e-86 323.2 236 75.0
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 4.7e-82 308.9 206 77.7
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 8.1e-82 308.1 210 77.6
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 4.4e-80 302.4 232 72.4
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 3.7e-79 299.3 273 58.6
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.9e-68 262.7 209 67.0
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.2e-62 242.7 169 76.3
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.8e-57 227.3 308 41.6
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 4.9e-47 192.6 149 71.1
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 8.4e-47 191.8 143 73.4
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 3.5e-45 186.4 298 40.6
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 6.7e-28 129.0 105 64.8
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 8.2e-26 122.1 90 68.9
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 2.9e-23 113.6 99 61.6
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.9e-22 110.9 101 61.4
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.2e-22 110.2 249 37.3
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 4.2e-22 109.8 121 52.1
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 4.7e-21 106.3 81 67.9
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.4e-20 104.8 91 64.8
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.3e-20 104.0 118 54.2
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.5e-16 90.1 62 79.0
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.8e-15 86.7 61 72.1
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.8e-15 86.7 62 72.6
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.5e-15 85.9 62 74.2
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.9e-12 76.6 58 72.4
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 3.9e-12 76.6 108 45.4
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.7e-12 75.9 55 74.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.7e-10 71.2 55 60.0
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 9.1e-09 65.5 75 46.7
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 1.2e-08 65.1 70 48.6
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 3.5e-08 63.5 45 64.4
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 5.9e-08 62.8 42 69.0
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.7e-07 61.2 37 81.1
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 5.0e-07 59.7 35 77.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 5.0e-07 59.7 35 77.1
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 6.5e-07 59.3 126 35.7


User provided reference genes

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