Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 0.0e+00 1119.8 601 100.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 0.0e+00 1105.5 603 98.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 0.0e+00 1082.0 605 97.2
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 4.4e-280 967.6 595 89.4
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 4.4e-280 967.6 595 89.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-261 905.2 586 86.2
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.1e-238 830.1 692 70.7
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 3.6e-218 761.9 653 69.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.0e-208 729.6 634 69.2
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.7e-204 714.5 617 69.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 6.7e-204 714.5 644 67.4
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.2e-191 672.9 622 68.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.3e-154 550.8 653 53.4
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.1e-126 458.0 474 57.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.1e-116 424.9 443 57.6
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.4e-116 423.7 455 55.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.2e-113 412.9 469 54.8
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-108 397.9 458 53.9
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-107 394.8 419 55.8
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.5e-107 394.4 422 55.7
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.5e-107 394.4 697 40.9
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.9e-106 390.2 610 46.7
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.8e-103 380.9 441 54.2
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.5e-99 366.3 548 46.4
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.4e-97 361.3 691 39.9
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.0e-83 314.3 526 40.1
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.5e-81 307.4 484 42.1
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.2e-81 306.6 526 39.5
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 4.2e-81 306.6 526 39.5
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.6e-80 303.1 488 41.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 6.1e-80 302.8 520 40.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.1e-78 298.5 511 39.5
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.8e-76 291.2 448 41.7
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 4.1e-76 290.0 505 39.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 4.5e-75 286.6 494 37.9
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.5e-75 286.6 488 37.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.0e-74 285.4 643 35.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.7e-74 284.6 476 39.7
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.7e-74 284.6 554 37.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.7e-74 284.6 487 40.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.2e-74 284.3 523 38.8
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 3.8e-74 283.5 456 40.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.8e-74 283.5 494 37.0
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 3.8e-74 283.5 457 39.8
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.4e-73 281.6 512 39.1
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.2e-73 280.0 442 39.4
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.2e-73 279.3 508 37.8
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 9.4e-73 278.9 434 41.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 9.4e-73 278.9 434 41.2
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.2e-72 278.5 471 37.6
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-72 278.1 428 39.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.7e-72 277.3 475 39.2
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.6e-72 276.9 482 37.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.6e-72 276.9 429 40.8
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 3.6e-72 276.9 432 39.1
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 4.7e-72 276.6 495 38.6
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.0e-71 275.4 495 38.6
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.7e-71 272.7 487 38.4
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.7e-71 272.7 483 37.3
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.7e-70 269.6 428 39.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 5.7e-70 269.6 494 38.1
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 3.7e-69 266.9 482 38.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.4e-68 264.2 455 38.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.5e-67 261.5 590 34.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 4.5e-67 260.0 657 33.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 4.5e-67 260.0 475 36.8
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 5.9e-67 259.6 657 33.0
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.9e-67 259.6 505 36.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 7.7e-67 259.2 648 34.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.0e-66 258.8 524 36.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.3e-66 258.5 451 36.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.7e-66 258.1 448 35.7
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.7e-66 258.1 487 38.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.2e-66 257.7 475 36.6
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 8.5e-66 255.8 459 36.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.1e-65 255.4 476 36.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.4e-65 255.0 478 37.2
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.5e-65 253.1 656 36.0
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-64 251.9 447 39.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.2e-64 251.9 497 37.0
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.6e-64 250.4 445 35.7
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.6e-64 250.4 486 36.0
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.1e-64 249.6 444 36.9
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 6.1e-64 249.6 601 33.6
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 6.1e-64 249.6 483 37.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-63 248.4 492 35.6
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.8e-63 248.1 468 35.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.8e-63 248.1 500 34.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.8e-63 248.1 482 36.7
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 3.0e-63 247.3 455 37.6
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.6e-62 244.2 440 37.0
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.3e-62 243.8 465 35.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.2e-61 241.1 458 35.4
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 6.3e-61 239.6 644 31.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.3e-61 239.6 401 38.7
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-60 238.4 528 33.3
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.4e-60 238.4 434 37.3
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.8e-60 238.0 668 31.3
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.8e-60 238.0 438 36.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.1e-60 237.3 486 33.7
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.1e-60 236.9 655 31.3
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.1e-60 236.9 607 32.5
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 7.0e-60 236.1 464 35.8
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 7.0e-60 236.1 644 31.1
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.2e-59 235.3 444 36.3
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.6e-59 235.0 398 38.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.0e-59 234.6 468 35.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.6e-59 234.2 419 38.2
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 5.9e-59 233.0 441 35.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 7.2e-57 226.1 636 31.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 9.4e-57 225.7 453 33.6
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.2e-56 225.3 620 32.3
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.1e-56 224.6 479 34.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.3e-55 221.1 640 31.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.0e-55 220.3 472 32.4
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.7e-55 219.5 640 30.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 7.5e-54 216.1 601 33.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 8.2e-53 212.6 389 37.0
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.2e-51 208.8 382 36.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 6.5e-50 203.0 505 30.7
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.5e-49 201.8 415 33.5
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.0e-47 195.7 453 32.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.2e-47 193.4 679 29.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 7.0e-44 183.0 454 31.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.5e-41 175.3 161 59.6
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.6e-40 171.8 356 35.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.8e-40 171.0 375 34.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.7e-40 170.2 375 34.1
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 5.2e-39 166.8 400 31.0
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.8e-37 161.0 316 37.7
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.8e-37 161.0 202 44.6
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.4e-36 158.7 364 32.4
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.5e-35 154.1 324 37.7
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.7e-34 151.8 239 38.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 7.3e-33 146.4 330 32.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 7.3e-33 146.4 530 25.8
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 9.5e-33 146.0 416 28.8
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-25 122.5 241 33.6
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.5e-25 121.3 136 49.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.3e-25 120.9 154 51.3
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-24 118.2 140 48.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 4.7e-24 117.1 156 49.4
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 8.0e-24 116.3 130 53.8
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.9e-20 105.1 79 62.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.4e-20 103.6 138 48.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.3e-18 98.2 77 64.9
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.3e-18 98.2 665 25.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.8e-15 88.6 374 23.3
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.2e-11 75.9 360 22.5
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-11 75.5 50 70.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.7e-11 74.7 72 38.9
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 3.5e-11 74.3 50 68.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 6.0e-11 73.6 106 34.9
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 7.8e-11 73.2 349 24.1
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.0e-10 72.8 196 30.1
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.0e-10 71.2 100 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.1e-08 63.2 320 24.1
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 8.1e-08 63.2 40 70.0
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.1e-07 61.2 52 53.8
AagrBONN_evm.TU.Sc2ySwM_362.389 Anthoceros agrestis HOM05D000465 ORTHO05D000301 6.8e-07 60.1 74 39.2
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-07 60.1 64 34.4


User provided reference genes

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