Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p32440 Brassica napus HOM05D002532 ORTHO05D041531 6.1e-174 614.8 506 100.0
BcaC07g37574 Brassica carinata HOM05D002532 ORTHO05D008197 1.7e-19 101.7 92 65.2
BcaC05g27324 Brassica carinata HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
A09p33350 Brassica napus HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
C05p32430 Brassica napus HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
BolC5t31976H Brassica oleracea HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
BraA09t38878Z Brassica rapa HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
CARHR032330 Cardamine hirsuta HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
Thhalv10008713m.g Eutrema salsugineum HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
Sp1g28010 Schrenkiella parvula HOM05D002532 ORTHO05D008197 5.0e-19 100.1 103 60.2
AL1G47290 Arabidopsis lyrata HOM05D002532 ORTHO05D008197 6.6e-19 99.8 103 59.2
AT1G32990 Arabidopsis thaliana HOM05D002532 ORTHO05D008197 6.6e-19 99.8 103 59.2
Carub.0001s3129 Capsella rubella HOM05D002532 ORTHO05D008197 6.6e-19 99.8 103 59.2
Prupe.5G134200 Prunus persica HOM05D002532 ORTHO05D008197 2.5e-18 97.8 92 62.0
MD06G1123700 Malus domestica HOM05D002532 ORTHO05D008197 7.3e-18 96.3 92 60.9
Manes.01G000465 Manihot esculenta HOM05D002532 ORTHO05D008197 7.3e-18 96.3 90 61.1
EL10Ac5g12396 Beta vulgaris HOM05D002532 ORTHO05D008197 9.5e-18 95.9 92 59.8
Potri.001G450800 Populus trichocarpa HOM05D002532 ORTHO05D008197 9.5e-18 95.9 90 60.0
THA.LOC104815429 Tarenaya hassleriana HOM05D002532 ORTHO05D008197 9.5e-18 95.9 90 61.1
Aa31LG6G7570 Aethionema arabicum HOM05D002532 ORTHO05D008197 1.2e-17 95.5 103 56.3
Lalb_Chr14g0362621 Lupinus albus HOM05D002532 ORTHO05D008197 1.2e-17 95.5 90 61.1
Atru.chr9.1843 Acer truncatum HOM05D002532 ORTHO05D008197 2.1e-17 94.7 92 60.9
MELO3C005800.2 Cucumis melo HOM05D002532 ORTHO05D008197 2.1e-17 94.7 90 58.9
Gohir.A11G017800 Gossypium hirsutum HOM05D002532 ORTHO05D008197 2.1e-17 94.7 92 59.8
Gohir.D11G017600 Gossypium hirsutum HOM05D002532 ORTHO05D008197 2.1e-17 94.7 92 59.8
Gorai.007G018600 Gossypium raimondii HOM05D002532 ORTHO05D008197 2.1e-17 94.7 92 59.8
QL02p027188 Quercus lobata HOM05D002532 ORTHO05D008197 2.1e-17 94.7 91 60.4
QL09p002605 Quercus lobata HOM05D002532 ORTHO05D008197 2.1e-17 94.7 91 60.4
RcHm_v2.0_Chr7g0187751 Rosa chinensis HOM05D002532 ORTHO05D008197 2.1e-17 94.7 92 62.0
MD14G1139900 Malus domestica HOM05D002532 ORTHO05D008197 2.8e-17 94.4 92 58.7
MBI04_g09603_MAGBIO Magnolia biondii HOM05D002532 ORTHO05D008197 3.6e-17 94.0 92 58.7
unitig_744.g24032 Utricularia gibba HOM05D002532 ORTHO05D008197 3.6e-17 94.0 90 58.9
Sed0006934 Sechium edule HOM05D002532 ORTHO05D008197 4.7e-17 93.6 103 55.3
A08p08790 Brassica napus HOM05D002532 ORTHO05D008197 6.1e-17 93.2 103 56.3
CsaV3_5G001490 Cucumis sativus L. HOM05D002532 ORTHO05D008197 6.1e-17 93.2 90 58.9
CAN.G567.110 Capsicum annuum HOM05D002532 ORTHO05D008197 8.0e-17 92.8 92 57.6
Cfa011892 Carpinus fangiana HOM05D002532 ORTHO05D008197 8.0e-17 92.8 92 59.8
Ca_16293_v3 Cicer arietinum L. HOM05D002532 ORTHO05D008197 8.0e-17 92.8 101 54.5
Haze_09208 Corylus avellana HOM05D002532 ORTHO05D008197 8.0e-17 92.8 92 59.8
Potri.011G150700 Populus trichocarpa HOM05D002532 ORTHO05D008197 8.0e-17 92.8 90 57.8
GSVIVG01019689001 Vitis vinifera HOM05D002532 ORTHO05D008197 1.0e-16 92.4 90 56.7
Duzib068G1233 Durio zibethinus HOM05D002532 ORTHO05D008197 1.4e-16 92.0 101 55.4
Nn3g18784 Nelumbo nucifera HOM05D002532 ORTHO05D008197 1.4e-16 92.0 90 56.7
PGR031G0783 Punica granatum HOM05D002532 ORTHO05D008197 1.4e-16 92.0 90 58.9
CDE04G2742 Ceratophyllum demersum HOM05D002532 ORTHO05D008197 1.8e-16 91.7 90 55.6
CDE12G0198 Ceratophyllum demersum HOM05D002532 ORTHO05D008197 1.8e-16 91.7 90 55.6
ClCG01G001360 Citrullus lanatus HOM05D002532 ORTHO05D008197 1.8e-16 91.7 90 56.7
Nitab4.5_0008664g0010 Nicotiana tabacum HOM05D002532 ORTHO05D008197 1.8e-16 91.7 90 56.7
TWI60G0138 Tripterygium wilfordii HOM05D002532 ORTHO05D008197 1.8e-16 91.7 100 56.0
CiPaw.11G109300 Carya illinoinensis HOM05D002532 ORTHO05D008197 2.3e-16 91.3 90 57.8
Eucgr.D01648 Eucalyptus grandis HOM05D002532 ORTHO05D008197 2.3e-16 91.3 101 54.5
CANSAT21G1421 Cannabis sativa HOM05D002532 ORTHO05D008197 3.0e-16 90.9 101 54.5
COL.COLO4_10838 Corchorus olitorius HOM05D002532 ORTHO05D008197 3.0e-16 90.9 101 53.5
Lsat_1_v5_gn_2_123641 Lactuca sativa HOM05D002532 ORTHO05D008197 3.0e-16 90.9 90 55.6
Solyc08g083350.4 Solanum lycopersicum HOM05D002532 ORTHO05D008197 3.0e-16 90.9 90 56.7
Sopen08g031560 Solanum pennellii HOM05D002532 ORTHO05D008197 3.0e-16 90.9 90 56.7
PGSC0003DMG400012225 Solanum tuberosum HOM05D002532 ORTHO05D008197 3.0e-16 90.9 90 56.7
arahy.Tifrunner.gnm1.ann1.IPH7D2 Arachis hypogaea HOM05D002532 ORTHO05D008197 5.2e-16 90.1 101 53.5
arahy.Tifrunner.gnm1.ann1.TN6CXG Arachis hypogaea HOM05D002532 ORTHO05D008197 5.2e-16 90.1 101 53.5
Cc08_g17010 Coffea canephora HOM05D002532 ORTHO05D008197 5.2e-16 90.1 101 53.5
FvH4_5g10460 Fragaria vesca HOM05D002532 ORTHO05D008197 5.2e-16 90.1 103 54.4
FAN08G2575 Fragaria x ananassa HOM05D002532 ORTHO05D008197 5.2e-16 90.1 103 54.4
FAN18G2603 Fragaria x ananassa HOM05D002532 ORTHO05D008197 5.2e-16 90.1 103 54.4
Peaxi162Scf00074g00020 Petunia axillaris HOM05D002532 ORTHO05D008197 5.2e-16 90.1 90 55.6
SMO347G0410 Selaginella moellendorffii HOM05D002532 ORTHO05D008197 8.9e-16 89.4 101 53.5
HPP92_018477 Vanilla planifolia HOM05D002532 ORTHO05D008197 8.9e-16 89.4 91 56.0
ATR0661G185 Amborella trichopoda HOM05D002532 ORTHO05D008197 1.2e-15 89.0 87 57.5
MSTRG.2034 Avicennia marina HOM05D002532 ORTHO05D008197 1.2e-15 89.0 90 54.4
CiPaw.12G075500 Carya illinoinensis HOM05D000015 ORTHO05D001173 1.5e-15 88.6 86 58.1
Phvul.006G007380 Phaseolus vulgaris HOM05D002532 ORTHO05D008197 1.5e-15 88.6 90 56.7
HanXRQChr07g0203121 Helianthus annuus HOM05D002532 ORTHO05D008197 2.0e-15 88.2 101 53.5
Medtr3g080800 Medicago truncatula HOM05D002532 ORTHO05D008197 2.0e-15 88.2 101 51.5
Oeu022025.1 Olea europaea HOM05D001632 ORTHO05D001534 2.0e-15 88.2 101 51.5
TPR.G21327 Trifolium pratense HOM05D002532 ORTHO05D008197 2.0e-15 88.2 101 51.5
Lj6g0013288 Lotus japonicus HOM05D002532 ORTHO05D008197 2.6e-15 87.8 87 57.5
BolC5t31977H Brassica oleracea HOM05D002532 ORTHO05D041531 3.4e-15 87.4 85 100.0
AUR62007082 Chenopodium quinoa HOM05D002532 ORTHO05D008197 3.4e-15 87.4 103 53.4
AUR62019945 Chenopodium quinoa HOM05D002532 ORTHO05D008197 3.4e-15 87.4 103 53.4
Dinv18771 Davidia involucrata HOM05D002532 ORTHO05D008197 3.4e-15 87.4 90 53.3
PSO063G0078 Papaver somniferum HOM05D002532 ORTHO05D008197 3.4e-15 87.4 101 51.5
PSO782G3318 Papaver somniferum HOM05D002532 ORTHO05D008197 3.4e-15 87.4 101 51.5
SGA_v2.0_scaffold88G27241 Striga asiatica HOM05D002532 ORTHO05D008197 3.4e-15 87.4 90 52.2
Thecc.03G216600 Theobroma cacao HOM05D002532 ORTHO05D008197 3.4e-15 87.4 101 49.5
Actinidia22227 Actinidia chinensis HOM05D002532 ORTHO05D008197 4.4e-15 87.0 101 51.5
Glyma.01G201000 Glycine max HOM05D002532 ORTHO05D008197 5.7e-15 86.7 87 57.5
HanXRQChr14g0459431 Helianthus annuus HOM05D002532 ORTHO05D008197 5.7e-15 86.7 101 52.5
Psat5g110320 Pisum sativum HOM05D002532 ORTHO05D008197 5.7e-15 86.7 101 52.5
Aa31LG6G7550 Aethionema arabicum HOM05D002532 ORTHO05D008197 1.3e-14 85.5 103 50.5
Sabra16G0304500 Salix brachista HOM05D002532 ORTHO05D008197 1.3e-14 85.5 121 45.5
Ciclev10022134m.g Citrus clementina HOM05D002532 ORTHO05D008197 1.7e-14 85.1 87 57.5
Pp3c10_12450 Physcomitrium patens HOM05D002532 ORTHO05D008197 1.7e-14 85.1 100 50.0
Pp3c12_19370 Physcomitrium patens HOM05D002532 ORTHO05D008197 1.7e-14 85.1 100 50.0
Sc01g0010890 Simmondsia chinensis HOM05D002532 ORTHO05D008197 1.7e-14 85.1 101 50.5
HPP92_018485 Vanilla planifolia HOM05D002532 ORTHO05D008197 2.9e-14 84.3 89 55.1
Pp3c3_20370 Physcomitrium patens HOM05D002532 ORTHO05D008197 4.9e-14 83.6 89 52.8
Migut.E00720 Erythranthe guttata HOM05D002532 ORTHO05D008197 6.4e-14 83.2 90 52.2
Os03g0122200 Oryza sativa ssp. japonica HOM05D002532 ORTHO05D008197 1.4e-13 82.0 101 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2484 Anthoceros agrestis HOM05D002532 ORTHO05D008197 3.2e-13 80.9 101 48.5
DCAR_006568 Daucus carota HOM05D002532 ORTHO05D008197 3.2e-13 80.9 101 47.5
Zm00001eb001640 Zea mays HOM05D002532 ORTHO05D008197 4.1e-13 80.5 101 47.5
Mapoly0003s0224 Marchantia polymorpha HOM05D002532 ORTHO05D008197 5.4e-13 80.1 100 50.0
AT5G51610 Arabidopsis thaliana HOM05D002532 ORTHO05D008197 7.0e-13 79.7 92 51.1
FAN04G0127 Fragaria x ananassa HOM05D002532 ORTHO05D008197 1.6e-12 78.6 46 84.8
FAN13G0292 Fragaria x ananassa HOM05D002532 ORTHO05D008197 1.6e-12 78.6 46 84.8
Aqoxy5G04350 Aquilegia oxysepala HOM05D002532 ORTHO05D008197 2.7e-12 77.8 86 52.3
TAR578G0001 Trochodendron aralioides HOM05D002532 ORTHO05D008197 4.6e-12 77.0 44 79.5
Hma1.2p1_0436F.1_g152860 Hydrangea macrophylla HOM05D002532 ORTHO05D008197 7.8e-12 76.3 111 43.2
CARHR151050 Cardamine hirsuta HOM05D002532 ORTHO05D008197 1.0e-11 75.9 103 46.6
ECA238G2753 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-11 75.9 93 49.5
vmacro11481 Vaccinium macrocarpon HOM05D002532 ORTHO05D008197 1.3e-11 75.5 129 39.5
Glyma.13G000900 Glycine max HOM05D002532 ORTHO05D008197 6.6e-11 73.2 45 77.8
Carub.0008s1165 Capsella rubella HOM05D002532 ORTHO05D008197 3.3e-10 70.9 48 72.9
SEGI_00983 Sequoiadendron giganteum HOM05D002532 ORTHO05D008197 2.8e-09 67.8 43 67.4
MCO12G206 Micromonas commoda HOM05D002532 ORTHO05D008197 1.3e-06 58.9 88 42.0
Pp3c2_26030 Physcomitrium patens HOM05D002532 ORTHO05D008197 1.3e-06 58.9 52 63.5
TAR375G1066 Trochodendron aralioides HOM05D002532 ORTHO05D008197 1.7e-06 58.5 75 48.0


User provided reference genes

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