Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 2.7e-166 588.6 298 100.0
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 1.4e-77 293.9 179 86.0
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 5.0e-67 258.8 157 85.4
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 3.2e-58 229.6 136 86.0
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 7.5e-55 218.4 173 68.2
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 2.9e-51 206.5 174 64.9
C06p35280 Brassica napus HOM05D003893 ORTHO05D021800 3.8e-51 206.1 138 78.3
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 4.2e-50 202.6 174 63.8
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 5.5e-50 202.2 174 64.4
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 1.6e-49 200.7 174 62.6
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.7e-49 199.9 174 62.6
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.0e-48 198.0 174 62.6
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 9.8e-47 191.4 201 57.2
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 1.7e-46 190.7 132 76.5
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 2.2e-46 190.3 165 64.2
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 2.2e-46 190.3 165 64.2
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 3.7e-46 189.5 165 63.6
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.4e-45 187.6 144 72.9
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 3.1e-45 186.4 201 57.7
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 4.1e-45 186.0 174 59.8
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 6.6e-27 125.6 225 39.1
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.4e-21 107.8 161 41.0
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 3.2e-21 106.7 185 38.9
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 7.0e-21 105.5 186 37.1
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 2.7e-20 103.6 192 34.9
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 2.7e-20 103.6 198 35.9
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.6e-20 102.8 195 36.4
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 1.7e-19 100.9 194 36.1
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.9e-18 97.4 195 37.4
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 3.3e-18 96.7 229 32.8
BcaC02g11244 Brassica carinata HOM05D003893 ORTHO05D094965 5.6e-18 95.9 49 95.9
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 7.3e-18 95.5 181 37.0
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 2.3e-16 90.5 185 35.1
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 4.0e-16 89.7 199 33.7
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.0e-16 89.7 167 35.3
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 9.8e-15 85.1 199 29.1
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 1.3e-14 84.7 201 28.9
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 1.7e-14 84.3 192 33.9
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.7e-14 84.3 192 32.8
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 2.9e-14 83.6 156 35.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 4.9e-14 82.8 184 33.7
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 4.9e-14 82.8 175 33.7
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 4.9e-14 82.8 189 31.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.4e-13 81.3 196 28.1
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 2.4e-13 80.5 186 30.1
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 2.4e-13 80.5 184 33.7
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 3.2e-13 80.1 182 32.4
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 4.1e-13 79.7 188 31.4
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 4.1e-13 79.7 176 32.4
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 5.4e-13 79.3 189 30.2
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 7.1e-13 79.0 192 27.1
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.2e-12 78.2 189 29.6
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 2.1e-12 77.4 178 28.1
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 2.7e-12 77.0 187 32.1
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.7e-12 77.0 187 32.6
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.7e-12 77.0 187 32.1
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 3.5e-12 76.6 183 30.1
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 1.3e-11 74.7 114 38.6
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.3e-11 73.9 191 30.9
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 5.1e-11 72.8 183 30.1
A09p23880 Brassica napus HOM05D003893 ORTHO05D005167 7.3e-10 68.9 36 83.3
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.3e-10 68.9 197 26.9
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 7.3e-10 68.9 188 31.9
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 9.5e-10 68.6 98 41.8
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 9.5e-10 68.6 98 41.8
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 2.8e-09 67.0 182 27.5
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.6e-09 66.6 126 34.9
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.6e-09 66.6 62 51.6
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 4.7e-09 66.2 182 26.9
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 4.7e-09 66.2 179 26.8
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 6.2e-09 65.9 177 27.7
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.8e-08 64.3 184 26.6
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 2.3e-08 63.9 103 40.8
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 2.3e-08 63.9 113 38.1
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 3.1e-08 63.5 187 27.3
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 3.1e-08 63.5 184 29.3
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 6.8e-08 62.4 59 50.8
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 8.9e-08 62.0 172 27.9
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 8.9e-08 62.0 98 37.8
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 1.5e-07 61.2 250 25.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.0e-07 60.8 78 41.0
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 2.6e-07 60.5 179 27.9
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 4.4e-07 59.7 104 34.6
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 7.6e-07 58.9 193 27.5
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 7.6e-07 58.9 75 41.3
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 1.7e-06 57.8 69 40.6
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 4.9e-06 56.2 67 46.3
BcaC06g31482 Brassica carinata HOM05D005459 ORTHO05D006751 6.4e-06 55.8 37 73.0
A06p46000 Brassica napus HOM05D005459 ORTHO05D006751 8.4e-06 55.5 37 73.0
C07p29540 Brassica napus HOM05D005459 ORTHO05D006751 8.4e-06 55.5 37 73.0
BolC7t43505H Brassica oleracea HOM05D005459 ORTHO05D006751 8.4e-06 55.5 37 73.0
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 8.4e-06 55.5 184 25.5


User provided reference genes

Program Settings