Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 2.4e-56 221.9 108 100.0
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 2.4e-56 221.9 108 100.0
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 1.2e-15 86.7 54 74.1
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 3.6e-15 85.1 54 75.9
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 3.6e-15 85.1 54 75.9
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 3.6e-15 85.1 54 75.9
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 6.1e-15 84.3 54 74.1
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 6.1e-15 84.3 54 74.1
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 8.0e-15 84.0 54 74.1
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 8.0e-15 84.0 54 74.1
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 1.4e-14 83.2 67 62.7
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 2.3e-14 82.4 45 82.2
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 3.9e-14 81.6 54 70.4
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 5.2e-14 81.3 54 72.2
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.1e-13 80.1 54 70.4
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 1.5e-13 79.7 49 77.6
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.5e-13 79.7 54 68.5
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.5e-13 79.7 54 68.5
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 2.0e-13 79.3 54 66.7
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 2.0e-13 79.3 54 66.7
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 3.3e-13 78.6 54 68.5
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 3.3e-13 78.6 45 80.0
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 4.4e-13 78.2 54 64.8
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 7.4e-13 77.4 54 68.5
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 7.4e-13 77.4 45 80.0
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 9.7e-13 77.0 86 52.3
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 9.7e-13 77.0 87 51.7
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 2.2e-12 75.9 86 51.2
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.8e-12 75.5 87 52.9
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 3.7e-12 75.1 54 68.5
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.8e-12 74.7 54 66.7
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 4.8e-12 74.7 54 66.7
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 4.8e-12 74.7 45 77.8
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 4.8e-12 74.7 47 74.5
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 6.3e-12 74.3 45 75.6
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 6.3e-12 74.3 54 66.7
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 8.2e-12 73.9 54 61.1
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 8.2e-12 73.9 45 80.0
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 8.2e-12 73.9 79 53.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 1.1e-11 73.6 86 50.0
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 1.1e-11 73.6 86 50.0
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.1e-11 73.6 54 68.5
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 1.1e-11 73.6 45 75.6
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 1.1e-11 73.6 54 66.7
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.4e-11 73.2 45 75.6
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.4e-11 73.2 86 47.7
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.4e-11 73.2 54 64.8
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.4e-11 73.2 45 77.8
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.4e-11 73.2 45 73.3
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.8e-11 72.8 39 76.9
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 1.8e-11 72.8 46 73.9
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.8e-11 72.8 86 51.2
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.8e-11 72.8 54 64.8
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 2.4e-11 72.4 61 57.4
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 2.4e-11 72.4 86 50.0
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 3.1e-11 72.0 45 75.6
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 3.1e-11 72.0 45 75.6
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 3.1e-11 72.0 45 75.6
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 3.1e-11 72.0 86 51.2
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.1e-11 71.6 45 75.6
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 4.1e-11 71.6 45 77.8
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 4.1e-11 71.6 45 75.6
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 5.3e-11 71.2 45 75.6
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 5.3e-11 71.2 45 75.6
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 5.3e-11 71.2 45 75.6
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 5.3e-11 71.2 45 73.3
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 5.3e-11 71.2 45 75.6
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 7.0e-11 70.9 66 57.6
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 7.0e-11 70.9 39 76.9
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 9.1e-11 70.5 86 50.0
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 9.1e-11 70.5 86 50.0
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 9.1e-11 70.5 54 66.7
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.2e-10 70.1 86 46.5
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 1.2e-10 70.1 54 66.7
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.2e-10 70.1 54 66.7
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.2e-10 70.1 54 66.7
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.2e-10 70.1 54 66.7
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.2e-10 70.1 54 66.7
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.2e-10 70.1 45 73.3
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 1.6e-10 69.7 45 75.6
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 1.6e-10 69.7 53 64.2
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 2.0e-10 69.3 62 58.1
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 2.0e-10 69.3 54 61.1
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 2.0e-10 69.3 57 61.4
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 2.0e-10 69.3 75 48.0
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 2.6e-10 68.9 45 73.3
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 3.5e-10 68.6 45 73.3
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 3.5e-10 68.6 86 46.5
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 4.5e-10 68.2 54 64.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 5.9e-10 67.8 65 56.9
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 7.7e-10 67.4 36 80.6
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 7.7e-10 67.4 86 48.8
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.0e-09 67.0 45 73.3
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 1.7e-09 66.2 54 61.1
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 2.2e-09 65.9 54 63.0
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 2.9e-09 65.5 86 43.0
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 3.8e-09 65.1 86 41.9
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 8.5e-09 63.9 86 46.5
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.9e-08 62.8 53 58.5


User provided reference genes

Program Settings