Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p23500 Brassica napus HOM05D000005 ORTHO05D013528 8.1e-135 483.8 255 100.0
C05p23530 Brassica napus HOM05D000005 ORTHO05D000012 9.9e-48 194.5 139 81.3
BolC5t31066H Brassica oleracea HOM05D000005 ORTHO05D000012 9.9e-48 194.5 139 81.3
BcaC02g07540 Brassica carinata HOM05D000005 ORTHO05D000012 2.9e-47 193.0 139 81.3
A09p40590 Brassica napus HOM05D000005 ORTHO05D000012 3.2e-46 189.5 139 79.1
BraA09t39555Z Brassica rapa HOM05D000005 ORTHO05D000012 1.6e-45 187.2 139 78.4
BcaB07g32393 Brassica carinata HOM05D000005 ORTHO05D000012 4.6e-45 185.7 141 77.3
BcaB05g22226 Brassica carinata HOM05D000005 ORTHO05D000012 2.5e-43 179.9 143 76.2
AL1G38310 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 5.4e-38 162.2 141 68.8
Thhalv10023218m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 7.8e-37 158.3 153 64.7
AT1G27170 Arabidopsis thaliana HOM05D000005 ORTHO05D000012 5.1e-36 155.6 141 67.4
AT1G27180 Arabidopsis thaliana HOM05D000005 ORTHO05D000012 5.1e-36 155.6 141 67.4
Carub.0001s2378 Capsella rubella HOM05D000005 ORTHO05D000012 8.7e-36 154.8 143 64.3
AL1G38290 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 5.6e-35 152.1 141 66.0
C08p22470 Brassica napus HOM05D000005 ORTHO05D000012 5.6e-35 152.1 136 65.4
BcaB03g11975 Brassica carinata HOM05D000005 ORTHO05D000012 2.1e-34 150.2 141 66.7
Sp1g21590 Schrenkiella parvula HOM05D000005 ORTHO05D000012 2.1e-34 150.2 137 65.7
AL1G38300 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 2.8e-34 149.8 141 65.2
THA.LOC104822077 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 6.2e-34 148.7 132 66.7
BcaC07g39242 Brassica carinata HOM05D000005 ORTHO05D000012 1.4e-33 147.5 136 65.4
Sp1g21600 Schrenkiella parvula HOM05D000005 ORTHO05D000012 1.8e-33 147.1 128 68.8
BcaC07g39246 Brassica carinata HOM05D000005 ORTHO05D000012 2.4e-33 146.7 135 68.1
C08p22520 Brassica napus HOM05D000005 ORTHO05D000012 3.1e-33 146.4 135 68.1
A08p27780 Brassica napus HOM05D000005 ORTHO05D000012 6.9e-33 145.2 135 67.4
BolC8t49881H Brassica oleracea HOM05D000005 ORTHO05D000012 2.0e-32 143.7 134 64.9
BcaB03g11973 Brassica carinata HOM05D000005 ORTHO05D000012 7.6e-32 141.7 138 62.3
Thhalv10006573m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 2.2e-31 140.2 133 67.7
BolC5t31059H Brassica oleracea HOM05D000005 ORTHO05D013528 4.9e-31 139.0 114 77.2
BolC5t31061H Brassica oleracea HOM05D000005 ORTHO05D013528 6.4e-31 138.7 100 71.0
AL1G38285 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.9e-30 137.1 138 65.9
Aa31LG7G8010 Aethionema arabicum HOM05D000005 ORTHO05D000012 2.4e-30 136.7 141 59.6
A08p27810 Brassica napus HOM05D000005 ORTHO05D000012 1.3e-28 131.0 138 60.1
RcHm_v2.0_Chr4g0445031 Rosa chinensis HOM05D000005 ORTHO05D000012 3.9e-28 129.4 158 49.4
RcHm_v2.0_Chr4g0445061 Rosa chinensis HOM05D000005 ORTHO05D000012 7.3e-27 125.2 159 46.5
BraA08t34712Z Brassica rapa HOM05D000005 ORTHO05D000012 1.3e-26 124.4 138 57.2
Prupe.1G263400 Prunus persica HOM05D000005 ORTHO05D000012 4.8e-26 122.5 140 47.9
TAR371G0186 Trochodendron aralioides HOM05D000005 ORTHO05D000012 8.1e-26 121.7 140 52.9
C05p23470 Brassica napus HOM05D000005 ORTHO05D013528 2.4e-25 120.2 67 88.1
PGR102G0476 Punica granatum HOM05D000005 ORTHO05D000012 2.4e-25 120.2 135 45.9
BolC5t31062H Brassica oleracea HOM05D000005 ORTHO05D013528 4.0e-25 119.4 68 88.2
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 4.0e-25 119.4 140 52.9
PGR102G1004 Punica granatum HOM05D000005 ORTHO05D000012 1.5e-24 117.5 135 45.9
arahy.Tifrunner.gnm1.ann1.DW1R6S Arachis hypogaea HOM05D000005 ORTHO05D000012 2.0e-24 117.1 175 36.6
Potri.012G053200 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.8e-24 115.5 142 45.8
FAN07G1406 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.2e-23 113.6 159 52.2
FAN22G2050 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.2e-23 113.6 158 53.8
arahy.Tifrunner.gnm1.ann1.Y2N0N5 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.9e-23 113.2 175 41.1
CiPaw.05G142900 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.9e-23 113.2 139 51.8
MD16G1082600 Malus domestica HOM05D000005 ORTHO05D000012 2.9e-23 113.2 140 47.1
C05p23490 Brassica napus HOM05D000005 ORTHO05D013528 3.8e-23 112.8 68 85.3
FAN12G0142 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.8e-23 112.8 159 52.2
CiPaw.05G143100 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.9e-23 112.5 139 53.2
FvH4_4g35420 Fragaria vesca HOM05D000005 ORTHO05D000012 4.9e-23 112.5 159 52.2
FvH4_4g35411 Fragaria vesca HOM05D000005 ORTHO05D000012 1.4e-22 110.9 159 51.6
Sabra12G0037200 Salix brachista HOM05D000005 ORTHO05D000012 1.9e-22 110.5 132 54.5
Phvul.002G079200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 3.2e-22 109.8 141 51.1
Sabra12G0037100 Salix brachista HOM05D000005 ORTHO05D000012 3.2e-22 109.8 132 45.5
Cc11_g13880 Coffea canephora HOM05D000005 ORTHO05D000012 7.1e-22 108.6 140 44.3
Peaxi162Scf00828g00413 Petunia axillaris HOM05D000005 ORTHO05D000012 2.1e-21 107.1 140 47.1
QL03p067743 Quercus lobata HOM05D000005 ORTHO05D000012 4.6e-21 105.9 141 51.8
Prupe.1G263600 Prunus persica HOM05D000005 ORTHO05D000012 1.0e-20 104.8 150 50.7
CiPaw.05G143000 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.3e-20 104.4 129 51.9
MD16G1082200 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-20 104.4 140 53.6
Lj2g0014979 Lotus japonicus HOM05D000005 ORTHO05D000012 1.8e-20 104.0 132 53.0
Sabra15G0041700 Salix brachista HOM05D000005 ORTHO05D000012 2.3e-20 103.6 130 48.5
FAN07G1507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.9e-20 102.8 159 49.7
Lj6A797T30 Lonicera japonica HOM05D000005 ORTHO05D000012 3.9e-20 102.8 146 46.6
Eucgr.B03388 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.7e-20 102.1 135 41.5
CSS0049687 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.5e-19 100.9 153 45.8
Lj2g0014428 Lotus japonicus HOM05D000005 ORTHO05D000012 1.5e-19 100.9 133 51.9
TWI36G0972 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.5e-19 100.9 129 55.0
CSS0023319 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.9e-19 100.5 146 47.3
Psat4g130080 Pisum sativum HOM05D000005 ORTHO05D000012 1.9e-19 100.5 136 47.1
Solyc05g006620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.9e-19 100.5 129 48.1
TPR.G13374 Trifolium pratense HOM05D000005 ORTHO05D000012 3.3e-19 99.8 160 45.6
Manes.05G094300 Manihot esculenta HOM05D000005 ORTHO05D000012 4.3e-19 99.4 139 46.8
QL03p067941 Quercus lobata HOM05D000005 ORTHO05D000012 5.6e-19 99.0 145 47.6
CANSAT80G1024 Cannabis sativa HOM05D000005 ORTHO05D000012 9.6e-19 98.2 140 44.3
CARHR024680 Cardamine hirsuta HOM05D000005 ORTHO05D000012 9.6e-19 98.2 100 66.0
Duzib268G0999 Durio zibethinus HOM05D000005 ORTHO05D000012 9.6e-19 98.2 139 50.4
Nitab4.5_0002509g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 9.6e-19 98.2 142 46.5
Sabra12G0036900 Salix brachista HOM05D000005 ORTHO05D018643 1.3e-18 97.8 132 50.8
GSVIVG01020123001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.3e-18 97.8 158 45.6
Medtr8g062140 Medicago truncatula HOM05D000005 ORTHO05D000012 1.6e-18 97.4 161 44.1
TAR371G0085 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.8e-18 96.7 140 48.6
FAN12G4229 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.7e-18 96.3 159 48.4
Gohir.A03G144800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.7e-18 96.3 142 49.3
Nitab4.5_0013183g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 3.7e-18 96.3 134 46.3
Solyc05g006630.4 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.7e-18 96.3 133 47.4
VMungo1215G0566 Vigna mungo HOM05D000005 ORTHO05D000012 3.7e-18 96.3 124 52.4
Sopen05g002570 Solanum pennellii HOM05D000005 ORTHO05D000012 4.8e-18 95.9 133 45.9
Gohir.D02G168100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.2e-18 95.5 139 49.6
Gorai.005G188600 Gossypium raimondii HOM05D000005 ORTHO05D000012 8.1e-18 95.1 139 49.6
TWI36G0858 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 8.1e-18 95.1 129 51.2
Psat4g130120 Pisum sativum HOM05D000005 ORTHO05D000012 1.4e-17 94.4 136 44.9
Gohir.D02G167900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.8e-17 94.0 142 50.0
Prupe.1G263500 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-17 94.0 79 58.2
Sabra12G0037000 Salix brachista HOM05D000005 ORTHO05D000012 2.4e-17 93.6 132 49.2
Gorai.005G188300 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.1e-17 93.2 139 48.9
QL03p067966 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-17 92.4 145 46.9
Haze_12100 Corylus avellana HOM05D000005 ORTHO05D000012 6.9e-17 92.0 165 44.8
QL03p067929 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-16 90.5 151 45.7
Gorai.005G188500 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.4e-16 89.7 129 49.6
Nn7g37126 Nelumbo nucifera HOM05D000005 ORTHO05D000012 3.4e-16 89.7 140 46.4
CAN.G27.60 Capsicum annuum HOM05D000005 ORTHO05D000012 4.5e-16 89.4 140 42.9
CiPaw.05G143300 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.8e-16 89.0 139 47.5
Duzib268G1199 Durio zibethinus HOM05D000005 ORTHO05D000012 5.8e-16 89.0 139 47.5
Phvul.003G072400 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 5.8e-16 89.0 107 41.1
AUR62026544 Chenopodium quinoa HOM05D000005 ORTHO05D000012 7.6e-16 88.6 145 44.1
Cfa009069 Carpinus fangiana HOM05D000005 ORTHO05D000012 1.0e-15 88.2 147 46.3
Peaxi162Scf00209g00939 Petunia axillaris HOM05D000005 ORTHO05D000012 1.0e-15 88.2 129 42.6
FAN17G0480 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-15 87.4 159 44.0
Eucgr.B03389 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.2e-15 87.0 129 48.1
Potri.015G043600 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.2e-15 87.0 133 45.9
CiPaw.05G143200 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.9e-15 86.7 129 48.1
FvH4_4g35430 Fragaria vesca HOM05D000005 ORTHO05D000012 2.9e-15 86.7 159 44.0
QL03p067844 Quercus lobata HOM05D000005 ORTHO05D000012 3.8e-15 86.3 139 44.6
Haze_12098 Corylus avellana HOM05D000005 ORTHO05D000012 4.9e-15 85.9 157 43.9
Cfa009068 Carpinus fangiana HOM05D000005 ORTHO05D000012 6.5e-15 85.5 129 48.1
Glyma.01G039000 Glycine max HOM05D000005 ORTHO05D000012 6.5e-15 85.5 132 44.7
Sopen05g002560 Solanum pennellii HOM05D000005 ORTHO05D000012 8.4e-15 85.1 129 43.4
Haze_12099 Corylus avellana HOM05D000005 ORTHO05D000294 1.1e-14 84.7 157 43.9
Nitab4.5_0001030g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.1e-14 84.7 129 41.9
Sc04g0008790 Simmondsia chinensis HOM05D000005 ORTHO05D000012 1.9e-14 84.0 131 45.0
Peaxi162Scf00828g00035 Petunia axillaris HOM05D000005 ORTHO05D000012 4.2e-14 82.8 131 42.7
Medtr8g062130 Medicago truncatula HOM05D000005 ORTHO05D000012 1.2e-13 81.3 163 40.5
Phvul.003G072500 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 2.1e-13 80.5 139 41.0
EL10Ac6g13736 Beta vulgaris HOM05D000005 ORTHO05D000012 2.7e-13 80.1 157 42.0
AUR62039439 Chenopodium quinoa HOM05D000005 ORTHO05D000012 3.5e-13 79.7 140 40.7
Nn8g40911 Nelumbo nucifera HOM05D000005 ORTHO05D000012 4.6e-13 79.3 140 42.9
arahy.Tifrunner.gnm1.ann1.3D7DCX Arachis hypogaea HOM05D000005 ORTHO05D000012 7.9e-13 78.6 150 44.0
CAN.G27.62 Capsicum annuum HOM05D000005 ORTHO05D000012 1.3e-12 77.8 129 41.9
Lalb_Chr19g0127891 Lupinus albus HOM05D000005 ORTHO05D000012 1.8e-12 77.4 166 41.0
PGR119G0184 Punica granatum HOM05D000005 ORTHO05D000012 2.3e-12 77.0 123 40.7
Dinv24936 Davidia involucrata HOM05D000005 ORTHO05D000012 3.0e-12 76.6 139 41.7
Oeu030566.1 Olea europaea HOM05D000005 ORTHO05D000012 3.0e-12 76.6 128 42.2
Ah.03g132160 Amaranthus hybridus HOM05D000005 ORTHO05D000012 5.1e-12 75.9 154 42.9
TPR.G28076 Trifolium pratense HOM05D000005 ORTHO05D013528 5.1e-12 75.9 154 39.0
Oeu040021.1 Olea europaea HOM05D000005 ORTHO05D000012 8.7e-12 75.1 78 43.6
Rhsim12G0052700 Rhododendron simsii HOM05D000005 ORTHO05D000012 1.5e-11 74.3 129 42.6
Eucgr.B02581 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.9e-11 73.9 141 41.1
arahy.Tifrunner.gnm1.ann1.7121CT Arachis hypogaea HOM05D000005 ORTHO05D000012 1.3e-10 71.2 150 42.0
Hma1.2p1_0265F.1_g106420 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 1.3e-10 71.2 157 40.8
vmacro01213 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.3e-10 71.2 139 39.6
DCAR_031076 Daucus carota HOM05D000005 ORTHO05D000012 2.1e-10 70.5 136 32.4
CARHR024660 Cardamine hirsuta HOM05D000005 ORTHO05D000012 2.4e-09 67.0 49 67.3
TWI53G0929 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 5.3e-09 65.9 150 28.7
Ca_04009_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 1.2e-08 64.7 160 35.6
vmacro01214 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.5e-08 64.3 143 30.8
QL03p067835 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-08 63.5 211 32.2
Nitab4.5_0010164g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 3.4e-08 63.2 128 39.8
A09p40600 Brassica napus HOM05D000005 ORTHO05D000012 4.5e-08 62.8 69 53.6
BraA09t39556Z Brassica rapa HOM05D000005 ORTHO05D000012 4.5e-08 62.8 69 53.6
BcaC05g26337 Brassica carinata HOM05D000005 ORTHO05D000012 7.6e-08 62.0 47 66.0
C05p23460 Brassica napus HOM05D000005 ORTHO05D000012 7.6e-08 62.0 47 66.0
BolC5t31058H Brassica oleracea HOM05D000005 ORTHO05D000012 7.6e-08 62.0 47 66.0
Oeu030351.1 Olea europaea HOM05D000005 ORTHO05D013528 1.3e-07 61.2 88 40.9
Rhsim12G0052800 Rhododendron simsii HOM05D000005 ORTHO05D000012 2.9e-07 60.1 129 38.8
RhsimUnG0211800 Rhododendron simsii HOM05D000005 ORTHO05D000294 2.9e-07 60.1 129 38.8
vmacro22127 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 2.9e-07 60.1 141 33.3
Glyma.08G293600 Glycine max HOM05D000005 ORTHO05D000012 1.1e-06 58.2 116 41.4
BcaB07g32394 Brassica carinata HOM05D000005 ORTHO05D000012 1.4e-06 57.8 47 59.6
Rhsim12G0053200 Rhododendron simsii HOM05D000005 ORTHO05D000012 2.5e-06 57.0 129 38.0
Eucgr.L01910 Eucalyptus grandis HOM05D000005 ORTHO05D000012 4.2e-06 56.2 132 39.4


User provided reference genes

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