Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-158 562.4 297 100.0
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 3.6e-158 561.6 297 99.7
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.6e-156 555.4 297 98.3
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.3e-155 553.1 297 98.0
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 6.8e-141 504.2 298 91.6
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 6.3e-139 497.7 303 89.4
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.1e-138 496.9 298 90.3
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 2.0e-132 476.1 298 86.6
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 7.5e-132 474.2 328 80.5
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.2e-130 468.8 304 85.2
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.2e-129 466.8 303 85.8
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.0e-128 462.2 311 83.0
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 2.4e-122 442.6 310 80.3
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.9e-114 416.4 246 90.2
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.9e-111 406.4 311 75.2
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.2e-108 397.1 214 95.8
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 2.6e-108 396.0 212 95.8
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.0e-104 384.0 298 74.2
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 2.2e-99 366.3 309 71.8
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 2.4e-98 362.8 337 64.1
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.6e-97 358.6 231 82.7
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.9e-95 353.2 231 82.3
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.9e-95 353.2 231 82.3
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 4.3e-95 352.1 231 81.4
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.3e-94 350.5 231 81.4
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.6e-94 350.1 332 61.7
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 2.1e-94 349.7 253 77.5
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 4.8e-94 348.6 252 77.8
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 4.8e-94 348.6 263 73.8
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 8.1e-94 347.8 253 77.1
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.4e-93 347.1 340 63.2
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 2.4e-93 346.3 206 86.9
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.3e-93 345.1 278 68.7
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 9.0e-93 344.4 203 83.7
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.2e-92 344.0 229 78.2
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 2.0e-92 343.2 222 79.7
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.6e-92 342.8 230 80.4
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 4.5e-92 342.0 272 71.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 9.9e-92 340.9 237 76.4
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.3e-91 340.5 220 81.4
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.7e-91 340.1 277 66.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 4.9e-91 338.6 222 80.2
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 6.4e-91 338.2 309 65.0
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.1e-90 337.4 318 61.6
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-90 337.4 284 66.2
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.4e-90 337.0 222 80.2
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.4e-90 337.0 299 64.9
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.9e-90 336.7 310 61.9
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.9e-90 336.7 206 84.5
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 2.4e-90 336.3 240 76.7
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 3.2e-90 335.9 230 75.7
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 3.2e-90 335.9 225 79.1
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.2e-90 335.5 230 77.8
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 7.1e-90 334.7 206 84.0
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 9.3e-90 334.3 229 78.2
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 9.3e-90 334.3 229 78.2
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.2e-89 334.0 231 78.4
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.2e-89 334.0 204 84.3
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.1e-89 333.2 207 83.6
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.5e-89 332.4 224 77.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 3.5e-89 332.4 253 73.5
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.5e-89 332.4 222 79.3
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.6e-89 332.0 272 66.5
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 6.0e-89 331.6 220 79.5
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 6.0e-89 331.6 220 79.5
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.0e-88 330.9 308 63.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 1.0e-88 330.9 224 79.9
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.0e-88 330.9 221 79.2
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.3e-88 330.5 269 68.8
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.3e-88 330.5 206 82.5
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 2.3e-88 329.7 268 69.4
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 3.0e-88 329.3 220 78.6
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 3.0e-88 329.3 206 80.6
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.1e-88 328.6 238 73.1
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.7e-88 328.2 272 66.2
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 8.7e-88 327.8 206 83.0
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.1e-87 327.4 204 80.9
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.1e-87 327.4 282 64.9
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.1e-87 327.4 221 77.8
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.5e-87 327.0 272 66.2
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.5e-87 327.0 239 72.0
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.3e-87 325.9 209 80.9
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 4.3e-87 325.5 198 82.3
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 5.6e-87 325.1 222 76.6
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 7.4e-87 324.7 209 80.9
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.1e-86 323.2 220 75.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 2.1e-86 323.2 221 76.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 3.7e-86 322.4 221 76.0
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.2e-86 321.6 251 69.3
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 6.2e-86 321.6 222 74.8
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.4e-85 320.5 221 74.7
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.4e-85 320.5 230 73.0
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.8e-85 320.1 324 60.2
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.8e-85 320.1 193 83.9
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 5.3e-85 318.5 276 62.7
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.0e-84 316.6 407 51.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.0e-84 316.6 327 59.0
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 3.4e-84 315.8 232 72.8
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 3.8e-83 312.4 237 71.3
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 8.4e-83 311.2 206 79.6
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 4.2e-82 308.9 209 76.1
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 9.3e-82 307.8 183 84.7
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 1.8e-80 303.5 287 59.9
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 5.6e-79 298.5 323 57.0
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.3e-75 287.3 294 59.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.1e-71 274.2 223 67.7
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.7e-71 271.9 209 71.3
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.1e-69 265.8 206 70.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.2e-68 264.2 220 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 5.7e-63 245.4 182 65.4
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.4e-61 240.7 208 58.2
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 7.7e-60 235.0 144 80.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 5.0e-51 205.7 162 61.7
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 6.5e-51 205.3 210 52.4
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.2e-49 201.1 207 51.7
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 2.0e-47 193.7 218 47.7
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.3e-45 185.7 229 45.0
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 5.3e-45 185.7 177 52.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.6e-41 174.1 115 80.9
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 3.1e-37 159.8 144 62.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 5.2e-32 142.5 159 54.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.8e-24 117.5 149 38.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.7e-22 109.8 65 83.1
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.6e-17 93.2 96 56.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.3e-16 90.5 53 84.9
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 2.6e-15 87.0 49 93.9


User provided reference genes

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