Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 1.6e-100 369.4 188 100.0
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 3.2e-96 355.1 186 96.2
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 8.8e-94 347.1 188 95.7
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 5.0e-89 331.3 181 93.4
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 5.0e-89 331.3 181 93.4
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 3.7e-68 261.9 181 75.7
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 3.1e-67 258.8 180 75.6
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 5.4e-67 258.1 181 74.6
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 5.4e-67 258.1 181 74.6
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 5.4e-67 258.1 181 74.6
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 1.0e-65 253.8 181 74.0
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.0e-65 253.8 165 79.4
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 1.3e-65 253.4 182 77.5
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 2.9e-65 252.3 181 73.5
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 5.5e-64 248.1 180 75.0
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-62 242.3 169 75.7
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.0e-57 227.3 180 69.4
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.2e-47 193.7 166 68.7
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 4.1e-43 178.7 203 54.2
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 4.0e-38 162.2 106 80.2
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.9e-36 155.2 212 50.5
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 1.4e-35 153.7 208 51.4
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 1.4e-35 153.7 208 51.4
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 1.4e-35 153.7 208 51.4
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 4.6e-34 148.7 213 50.2
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 6.0e-34 148.3 215 48.8
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 3.9e-33 145.6 213 49.3
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 6.6e-33 144.8 211 48.8
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 8.6e-33 144.4 213 47.9
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 9.5e-32 141.0 208 48.6
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.7e-28 130.2 201 46.8
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 1.7e-28 130.2 205 44.4
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 6.4e-28 128.3 234 42.3
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 6.4e-28 128.3 216 44.4
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 6.0e-26 121.7 214 43.9
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 1.3e-25 120.6 209 45.0
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 1.9e-24 116.7 233 40.3
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 1.9e-24 116.7 233 40.3
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 1.9e-24 116.7 233 40.3
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 2.1e-23 113.2 198 42.4
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 2.8e-23 112.8 206 39.8
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 2.8e-23 112.8 206 39.8
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 3.6e-23 112.5 204 42.2
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 8.1e-23 111.3 200 42.5
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.6e-21 106.3 215 40.5
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 8.7e-17 91.3 107 52.3
CARHR022610 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.5e-16 89.7 75 66.7
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 3.6e-15 85.9 104 51.0
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 6.2e-15 85.1 200 35.0
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 3.1e-14 82.8 102 52.9
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.1e-14 82.8 129 42.6
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 3.1e-14 82.8 126 44.4
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 6.9e-14 81.6 129 45.0
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 1.2e-13 80.9 101 48.5
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.5e-13 80.5 129 41.9
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.5e-13 80.5 129 41.9
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 2.0e-13 80.1 57 63.2
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 2.0e-13 80.1 209 33.0
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 2.0e-13 80.1 111 47.7
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.6e-13 79.7 211 36.0
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.4e-13 79.3 185 35.7
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 3.4e-13 79.3 213 32.9
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 5.8e-13 78.6 103 49.5
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 7.6e-13 78.2 102 44.1
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 7.6e-13 78.2 135 43.7
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.3e-12 77.4 51 68.6
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.7e-12 77.0 128 43.0
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 1.7e-12 77.0 129 41.9
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.9e-12 76.3 114 48.2
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 2.9e-12 76.3 215 32.6
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 2.9e-12 76.3 203 35.5
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 3.8e-12 75.9 98 53.1
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 3.8e-12 75.9 98 53.1
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 3.8e-12 75.9 198 34.3
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 3.8e-12 75.9 152 38.2
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 4.9e-12 75.5 103 48.5
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 4.9e-12 75.5 205 35.6
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 6.4e-12 75.1 58 60.3
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.4e-12 75.1 103 47.6
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.4e-12 75.1 127 42.5
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 8.4e-12 74.7 152 38.2
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.1e-11 74.3 100 45.0
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 1.1e-11 74.3 109 43.1
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 1.1e-11 74.3 120 40.8
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.4e-11 73.9 62 56.5
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.4e-11 73.9 105 44.8
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.9e-11 73.6 106 43.4
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.9e-11 73.6 186 35.5
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.4e-11 73.2 187 34.2
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 3.2e-11 72.8 162 37.0
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 4.2e-11 72.4 117 41.0
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 4.2e-11 72.4 226 33.6
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 4.2e-11 72.4 50 60.0
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 4.2e-11 72.4 107 43.0
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 5.4e-11 72.0 81 51.9
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 5.4e-11 72.0 109 45.9
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 5.4e-11 72.0 174 36.8
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 7.1e-11 71.6 119 42.0
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 7.1e-11 71.6 149 38.3
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.2e-10 70.9 96 47.9
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.6e-10 70.5 113 41.6
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.6e-10 70.5 215 29.3
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.6e-10 70.5 124 42.7
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 1.6e-10 70.5 193 33.7
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.6e-10 70.5 97 45.4
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 2.1e-10 70.1 81 45.7
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 2.1e-10 70.1 154 34.4
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 2.7e-10 69.7 124 38.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 3.5e-10 69.3 111 38.7
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.5e-10 69.3 94 45.7
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.5e-10 69.3 104 45.2
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.5e-10 69.3 89 47.2
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 3.5e-10 69.3 194 32.5
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 4.6e-10 68.9 103 46.6
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 4.6e-10 68.9 110 43.6
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 4.6e-10 68.9 108 42.6
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 4.6e-10 68.9 113 42.5
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 7.9e-10 68.2 124 38.7
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 7.9e-10 68.2 108 44.4
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 7.9e-10 68.2 98 44.9
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.0e-09 67.8 116 41.4
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 1.0e-09 67.8 125 40.0
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.0e-09 67.8 213 35.7
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.3e-09 67.4 103 46.6
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 2.3e-09 66.6 48 64.6
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.3e-09 66.6 181 32.0
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-09 66.6 98 43.9
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 3.0e-09 66.2 94 47.9
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 3.0e-09 66.2 138 37.7
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 3.9e-09 65.9 100 44.0
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.1e-09 65.5 104 43.3
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 6.7e-09 65.1 98 44.9
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.7e-09 64.7 98 43.9
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 1.1e-08 64.3 96 41.7
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.5e-08 63.9 106 41.5
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.9e-08 63.5 94 44.7
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 2.5e-08 63.2 104 43.3
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 4.3e-08 62.4 108 42.6
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 4.3e-08 62.4 104 42.3
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 4.3e-08 62.4 42 64.3
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.6e-08 62.0 94 43.6
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 7.4e-08 61.6 50 62.0
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 7.4e-08 61.6 50 62.0
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 9.6e-08 61.2 172 32.6
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 9.6e-08 61.2 100 46.0
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.3e-07 60.8 44 65.9
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.6e-07 60.5 98 41.8
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.6e-07 60.5 95 42.1
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.8e-07 59.7 94 43.6
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 3.7e-07 59.3 40 62.5
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 3.7e-07 59.3 101 39.6
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 4.8e-07 58.9 138 34.1
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 6.2e-07 58.5 177 31.1
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 6.2e-07 58.5 183 33.9
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 6.2e-07 58.5 219 31.5
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 8.1e-07 58.2 44 59.1
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.1e-06 57.8 176 34.1
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.1e-06 57.8 31 77.4
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 1.4e-06 57.4 102 40.2
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.1e-06 56.2 178 32.0
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 5.3e-06 55.5 105 38.1
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 9.0e-06 54.7 31 71.0
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 9.0e-06 54.7 94 39.4


User provided reference genes

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