Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 4.2e-198 694.5 355 100.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 5.2e-196 687.6 355 98.9
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 5.9e-192 674.1 355 97.2
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 3.7e-186 654.8 355 95.8
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 4.5e-176 621.3 355 93.2
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 4.7e-173 611.3 355 91.5
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.3e-172 609.0 355 91.3
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 4.4e-171 604.7 355 91.8
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 4.4e-171 604.7 355 91.8
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 9.8e-171 603.6 355 91.5
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.2e-170 602.4 357 90.5
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 8.3e-170 600.5 355 88.5
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 1.6e-168 596.3 355 89.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 7.8e-168 594.0 355 88.5
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 3.0e-167 592.0 358 88.8
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.6e-152 543.1 355 81.7
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 9.5e-150 533.9 355 80.6
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.3e-133 480.3 305 79.7
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 6.2e-133 478.0 302 81.1
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.0e-132 475.3 305 80.0
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 5.3e-132 474.9 321 76.6
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 1.2e-131 473.8 319 75.2
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.2e-131 473.8 305 80.0
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 2.0e-131 473.0 299 81.3
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 2.0e-131 473.0 318 77.7
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 3.4e-131 472.2 298 79.9
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 7.6e-131 471.1 355 69.9
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 9.9e-131 470.7 319 77.1
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.3e-130 470.3 302 79.5
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 8.4e-130 467.6 305 79.0
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.1e-129 467.2 355 69.6
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 1.4e-129 466.8 308 76.9
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 4.2e-129 465.3 319 75.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 2.1e-128 463.0 299 78.6
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 2.7e-128 462.6 302 78.5
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 4.6e-128 461.8 321 74.8
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 4.6e-128 461.8 302 76.8
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 6.0e-128 461.5 299 77.6
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 6.0e-128 461.5 299 77.6
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 6.0e-128 461.5 321 75.7
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 6.0e-128 461.5 305 77.4
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.0e-127 460.7 319 74.3
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.8e-127 459.9 319 74.3
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.8e-127 459.9 326 73.0
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 2.3e-127 459.5 319 74.9
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 3.0e-127 459.1 322 73.6
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 5.1e-127 458.4 322 73.0
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 6.7e-127 458.0 291 81.1
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.1e-126 457.2 321 75.1
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 2.5e-126 456.1 321 73.2
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 4.3e-126 455.3 299 77.3
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.3e-126 455.3 326 72.1
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 5.6e-126 454.9 319 73.4
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 9.6e-126 454.1 321 72.9
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 9.6e-126 454.1 319 74.6
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.3e-125 453.8 323 71.8
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.3e-125 453.8 335 70.4
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.6e-125 453.4 312 73.4
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.1e-125 453.0 298 76.5
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 2.8e-125 452.6 293 79.5
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 3.7e-125 452.2 299 77.3
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 6.2e-125 451.4 312 73.4
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 6.2e-125 451.4 299 75.6
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 1.1e-124 450.7 299 75.9
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 2.4e-124 449.5 354 68.1
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 5.3e-124 448.4 296 76.7
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 1.2e-123 447.2 355 66.8
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.5e-123 446.8 293 78.2
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.5e-123 446.8 293 78.2
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 2.0e-123 446.4 301 75.4
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 4.5e-123 445.3 301 76.1
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 9.9e-123 444.1 330 70.6
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.2e-120 437.2 350 67.1
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 1.3e-119 433.7 295 73.9
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.3e-119 433.0 314 73.2
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 9.6e-118 427.6 260 82.7
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 9.6e-118 427.6 306 71.9
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.6e-117 426.8 273 78.4
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 4.9e-114 415.2 296 73.0
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.9e-114 415.2 319 69.3
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.5e-113 412.9 299 72.2
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.5e-113 412.9 289 73.7
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 9.3e-113 411.0 316 68.0
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 1.2e-112 410.6 299 71.6
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 2.1e-112 409.8 242 86.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 2.7e-112 409.5 298 69.8
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 7.9e-112 407.9 269 76.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 2.3e-111 406.4 323 67.2
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 3.9e-111 405.6 300 72.0
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 3.9e-111 405.6 299 70.9
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 4.3e-110 402.1 293 71.7
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 9.7e-110 401.0 328 65.9
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 9.7e-110 401.0 304 69.1
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 9.7e-110 401.0 300 68.3
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 9.7e-110 401.0 293 70.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.3e-109 400.6 295 71.2
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.2e-107 394.0 331 63.7
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.5e-107 393.7 300 69.0
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.0e-107 393.3 331 63.4
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 2.6e-107 392.9 331 63.4
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 3.4e-107 392.5 296 68.2
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 4.5e-107 392.1 300 68.7
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 5.9e-107 391.7 300 68.3
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.0e-106 391.0 292 69.9
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.3e-106 390.6 308 67.9
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 6.5e-106 388.3 295 68.1
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.1e-105 387.5 342 61.7
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.5e-105 386.3 331 63.1
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 5.5e-105 385.2 266 72.2
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.4e-103 380.6 258 73.3
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 5.1e-103 378.6 352 58.5
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 1.1e-102 377.5 263 71.5
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.5e-102 377.1 330 61.2
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.5e-102 377.1 259 72.6
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 5.3e-100 368.6 264 68.9
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.0e-99 366.7 316 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 9.4e-97 357.8 241 76.8
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 9.4e-97 357.8 331 60.7
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.5e-91 340.5 276 67.4
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 4.7e-88 328.9 251 64.5
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 9.7e-86 321.2 255 63.1
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.1e-81 307.8 268 63.8
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 3.2e-81 306.2 177 88.1
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 2.2e-74 283.5 249 57.8
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-66 257.3 191 72.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.5e-65 254.2 291 54.0
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 2.1e-64 250.4 179 69.3
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-51 207.2 146 71.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.1e-44 184.9 124 79.8
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 3.3e-41 173.3 114 70.2
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-40 171.0 103 86.4
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 5.4e-36 156.0 103 75.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 5.4e-36 156.0 103 75.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-25 121.7 63 100.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.2e-20 103.6 60 88.3
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.2e-19 101.7 192 31.8
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 1.9e-09 67.8 43 65.1


User provided reference genes

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