Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 0.0e+00 1082.8 679 100.0
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 0.0e+00 1082.4 679 99.9
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 0.0e+00 1082.4 679 99.9
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-310 1069.3 679 98.5
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.2e-310 1069.3 679 98.5
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 6.6e-309 1063.5 679 98.4
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.8e-293 1012.3 679 94.4
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 8.7e-293 1010.0 679 95.0
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 2.4e-287 991.9 679 93.2
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.3e-284 981.5 680 92.8
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 9.6e-284 979.9 681 92.5
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.0e-281 972.2 680 92.1
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.2e-271 937.9 681 89.6
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 3.6e-254 881.7 676 85.8
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.4e-252 874.8 670 84.8
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 4.1e-250 868.2 668 84.9
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.0e-250 867.5 679 83.7
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.0e-248 863.6 672 84.4
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.0e-236 822.8 670 71.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.0e-225 786.2 673 77.7
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.6e-222 775.4 678 77.1
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 6.4e-219 764.6 669 76.2
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 7.0e-218 761.1 657 76.9
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 7.8e-217 757.7 656 78.2
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.8e-214 749.2 666 76.4
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 8.0e-214 747.7 644 77.8
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 8.0e-214 747.7 654 74.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 5.8e-212 741.5 657 75.5
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 2.2e-211 739.6 665 76.4
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 9.2e-210 734.2 663 76.0
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 4.6e-209 731.9 673 72.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.0e-208 730.7 688 73.4
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 8.6e-208 727.6 674 74.6
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 5.6e-207 724.9 671 72.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 9.5e-207 724.2 648 76.1
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.2e-206 723.8 697 69.3
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.1e-206 723.0 663 70.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.3e-205 719.5 663 75.1
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.3e-205 719.5 681 74.0
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.6e-204 716.1 665 74.1
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.7e-203 712.2 671 71.7
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.6e-201 706.8 573 80.8
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 6.0e-201 704.9 658 73.3
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.3e-200 703.0 621 77.3
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 3.0e-200 702.6 668 70.7
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.9e-200 702.2 664 70.6
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 5.6e-199 698.4 656 71.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.8e-198 696.0 655 65.8
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.6e-198 695.7 673 67.6
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 3.6e-198 695.7 645 74.0
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 6.2e-198 694.9 655 72.4
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 2.4e-197 693.0 650 72.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 6.8e-197 691.4 660 72.0
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 6.4e-195 684.9 641 73.8
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.4e-194 682.9 650 73.4
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 3.2e-194 682.6 669 71.3
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 4.2e-194 682.2 671 61.7
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.4e-194 681.8 669 67.0
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.2e-194 681.0 668 71.4
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.2e-194 681.0 669 71.3
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.2e-193 680.6 641 73.3
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.6e-193 680.2 650 73.2
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.1e-193 679.9 666 70.4
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.7e-193 679.5 666 71.3
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 6.0e-193 678.3 672 68.2
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 7.8e-193 677.9 647 73.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.3e-192 677.2 641 73.2
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.3e-192 677.2 644 73.9
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.7e-192 676.8 648 73.5
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.9e-192 675.6 575 75.5
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 6.6e-192 674.9 645 69.5
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.1e-191 674.1 659 72.1
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.1e-191 674.1 650 70.9
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.9e-191 673.3 669 64.4
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.9e-191 673.3 647 73.0
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.3e-191 672.2 671 69.6
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 5.6e-191 671.8 657 72.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 7.3e-191 671.4 670 68.5
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.3e-190 670.6 658 71.3
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 2.8e-190 669.5 664 66.9
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 4.8e-190 668.7 658 65.5
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.8e-190 668.7 617 74.2
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 6.2e-190 668.3 664 71.2
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 8.1e-190 667.9 670 68.5
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 1.1e-189 667.5 671 68.9
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.4e-189 666.4 673 70.3
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 9.0e-189 664.5 666 68.5
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.2e-188 664.1 651 69.4
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.5e-188 663.7 671 68.7
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 3.4e-188 662.5 679 65.7
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.2e-187 659.8 636 71.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 2.9e-187 659.4 691 70.0
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.9e-187 658.7 666 65.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.4e-186 657.1 661 70.3
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 5.4e-186 655.2 679 65.4
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 2.1e-185 653.3 659 70.6
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 2.7e-185 652.9 690 68.7
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.3e-184 650.6 651 71.4
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.7e-184 650.2 638 73.0
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 5.6e-183 645.2 555 68.8
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 4.0e-181 639.0 702 59.3
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.4e-178 630.6 652 67.5
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 4.6e-177 625.5 664 69.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.0e-176 624.4 694 64.8
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.2e-172 610.9 581 73.5
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.1e-170 604.4 592 71.3
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.5e-167 593.2 645 61.9
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.0e-163 581.3 656 63.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 8.7e-160 568.2 599 64.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.8e-158 563.1 654 58.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.8e-158 562.4 526 77.8
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 8.2e-158 561.6 687 55.7
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 7.2e-146 521.9 523 74.2
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 9.4e-146 521.5 661 63.1
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 4.8e-142 509.2 612 55.7
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.0e-136 491.5 634 53.8
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.7e-134 483.0 715 57.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.1e-130 471.5 500 71.4
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 3.2e-130 469.9 508 72.4
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.2e-130 469.5 637 51.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 2.7e-129 466.8 507 66.9
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.2e-120 436.0 510 59.4
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.0e-116 424.1 245 82.4
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.9e-115 420.2 514 58.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 5.0e-115 419.5 520 49.4
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 4.2e-114 416.4 281 80.1
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.3e-112 410.6 267 77.2
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.2e-102 377.5 285 68.1
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.0e-96 356.7 486 63.6
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.4e-95 353.6 297 63.6
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 7.8e-92 342.4 176 97.7
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.7e-86 324.7 476 53.4
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 3.7e-86 323.6 252 64.7
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.1e-81 307.8 200 74.0
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 7.8e-76 289.3 304 85.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.1e-74 285.4 298 53.4
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 9.9e-71 272.3 139 97.8
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 5.1e-67 260.0 319 72.7
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 6.2e-65 253.1 295 48.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.5e-63 246.9 291 51.5
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 3.7e-57 227.3 164 68.3
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 2.6e-55 221.1 111 98.2
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 4.2e-53 213.8 111 95.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-51 208.4 193 56.0
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 8.2e-49 199.5 292 44.9
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.7e-46 191.8 208 49.0
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 5.1e-43 180.3 289 77.2
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 2.2e-38 164.9 83 89.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 6.1e-36 156.8 167 50.9
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.8e-35 155.2 178 52.8
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.3e-33 149.1 147 53.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.1e-32 146.0 546 33.7
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.0e-30 139.4 486 45.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-29 135.6 322 53.1
C01p48850 Brassica napus HOM05D003766 ORTHO05D024562 2.7e-28 131.3 75 90.7
C08p01500 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-27 129.4 75 89.3
C07p05440 Brassica napus HOM05D003766 ORTHO05D004607 2.3e-27 128.3 75 89.3
A05p35980 Brassica napus HOM05D003766 ORTHO05D024562 3.9e-27 127.5 75 86.7
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 3.9e-27 127.5 69 91.3
BraA05t22404Z Brassica rapa HOM05D003766 ORTHO05D024562 3.9e-27 127.5 75 86.7
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.8e-27 126.3 102 59.8
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 1.5e-26 125.6 543 31.3
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 2.0e-26 125.2 68 92.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-26 124.8 95 63.2
A05p18430 Brassica napus HOM05D003766 ORTHO05D024562 4.4e-26 124.0 75 85.3
BraA05t20733Z Brassica rapa HOM05D003766 ORTHO05D024562 4.4e-26 124.0 75 85.3
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.7e-26 122.9 102 60.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 2.8e-25 121.3 64 93.8
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.7e-25 120.9 111 55.0
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-24 118.2 72 86.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.6e-23 114.8 155 41.3
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.3e-22 112.5 66 84.8
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 4.4e-18 97.4 65 76.9
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 9.7e-18 96.3 59 83.1
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 2.2e-17 95.1 49 95.9
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 1.6e-15 89.0 52 90.4
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-14 85.5 84 59.5
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.9e-14 84.7 45 91.1
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.1e-13 82.8 118 40.7
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 9.4e-13 79.7 152 37.5
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 6.1e-12 77.0 118 39.0
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 1.0e-11 76.3 114 38.6
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-11 75.9 68 54.4
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.0e-07 62.0 72 43.1
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.9e-07 60.5 54 48.1
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.0e-06 59.7 68 48.5


User provided reference genes

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