Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 5.6e-65 251.1 161 100.0
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 5.6e-65 251.1 161 100.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 5.6e-65 251.1 161 100.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.2e-64 250.0 161 99.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.6e-64 249.6 161 99.4
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.2e-61 239.2 159 92.5
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 9.3e-60 233.8 160 93.8
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 5.6e-57 224.6 159 86.2
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.3e-56 223.4 129 92.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.6e-56 221.9 129 91.5
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 6.2e-56 221.1 129 90.7
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 3.1e-55 218.8 129 90.7
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.0e-55 218.4 127 91.3
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.0e-54 216.1 125 92.0
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.7e-53 213.0 138 83.3
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 4.9e-53 211.5 159 84.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.0e-50 203.8 127 86.6
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.4e-47 192.6 120 80.8
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.4e-47 192.6 127 76.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 6.9e-47 191.0 123 77.2
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 6.9e-47 191.0 122 79.5
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 6.9e-47 191.0 122 81.1
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 9.0e-47 190.7 122 78.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 9.0e-47 190.7 123 78.9
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 9.0e-47 190.7 118 81.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 9.0e-47 190.7 128 76.6
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.2e-46 190.3 122 78.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.5e-46 189.9 120 79.2
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.0e-46 189.5 120 78.3
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.4e-46 188.7 122 78.7
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.4e-46 188.7 124 76.6
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 3.4e-46 188.7 128 73.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 4.5e-46 188.3 122 77.9
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 5.8e-46 188.0 123 77.2
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 7.6e-46 187.6 122 79.5
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 78.0
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.7e-45 186.4 123 76.4
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.7e-45 186.4 120 78.3
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 2.9e-45 185.7 135 74.1
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 3.8e-45 185.3 120 76.7
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 3.8e-45 185.3 122 77.9
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 3.8e-45 185.3 122 77.9
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 4.9e-45 184.9 120 76.7
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 6.4e-45 184.5 120 76.7
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.4e-45 184.5 121 78.5
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.4e-45 184.5 121 78.5
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.1e-44 183.7 121 76.9
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.1e-44 183.7 121 76.9
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.4e-44 182.6 122 76.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.2e-44 182.2 124 74.2
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 4.2e-44 181.8 123 76.4
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 4.2e-44 181.8 128 72.7
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.5e-44 181.4 122 76.2
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 5.5e-44 181.4 124 74.2
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 5.5e-44 181.4 124 71.8
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 7.1e-44 181.0 120 75.8
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.1e-44 181.0 122 75.4
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 7.1e-44 181.0 122 75.4
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 9.3e-44 180.6 123 72.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 9.3e-44 180.6 123 74.0
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.6e-43 179.9 127 74.0
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.6e-43 179.9 120 77.5
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.6e-43 179.9 124 73.4
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.6e-43 179.9 123 73.2
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.6e-43 179.9 122 75.4
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.6e-43 179.9 121 76.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.1e-43 179.5 124 74.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.1e-43 179.5 122 74.6
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.7e-43 179.1 123 74.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.7e-43 179.1 120 75.8
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.5e-43 178.7 123 72.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.5e-43 178.7 123 72.4
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 3.5e-43 178.7 122 75.4
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 3.5e-43 178.7 121 76.0
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 3.5e-43 178.7 124 72.6
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 6.0e-43 177.9 123 74.8
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.0e-42 177.2 121 71.9
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.3e-42 176.0 122 73.8
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.3e-42 176.0 122 73.8
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.0e-42 175.6 123 73.2
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 3.0e-42 175.6 122 73.8
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.9e-42 175.3 120 75.0
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.9e-42 175.3 120 75.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 8.7e-42 174.1 122 74.6
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 8.7e-42 174.1 130 70.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 8.7e-42 174.1 122 72.1
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.5e-41 173.3 122 73.8
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.5e-41 173.3 121 71.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 5.6e-41 171.4 123 69.9
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 7.4e-41 171.0 121 71.1
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.4e-41 171.0 121 71.1
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 7.4e-41 171.0 121 73.6
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 7.4e-41 171.0 128 70.3
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 9.6e-41 170.6 120 71.7
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 9.6e-41 170.6 120 72.5
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-40 170.2 120 70.8
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 1.3e-40 170.2 120 71.7
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.6e-40 169.9 121 70.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.6e-40 169.9 122 73.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 2.8e-40 169.1 122 71.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 6.2e-40 167.9 123 70.7
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 4.0e-39 165.2 122 72.1
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 5.3e-39 164.9 120 71.7
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.6e-38 162.5 125 67.2
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 3.4e-38 162.2 127 61.4
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 3.8e-37 158.7 123 65.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.8e-37 158.7 127 61.4
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 8.4e-37 157.5 130 63.1
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-36 157.1 122 68.9
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.9e-36 156.4 121 68.6
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.9e-36 156.4 193 49.2
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 7.1e-36 154.5 116 69.0
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.1e-35 152.9 202 47.0
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 3.5e-35 152.1 96 79.2
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.0e-34 150.6 122 68.9
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 8.7e-34 147.5 127 60.6
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 5.7e-33 144.8 98 74.5
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 7.4e-33 144.4 98 75.5
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.2e-32 142.9 122 59.8
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 4.8e-32 141.7 120 60.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 8.2e-32 141.0 100 73.0
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-31 140.2 97 73.2
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 2.4e-31 139.4 89 78.7
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.6e-30 136.0 127 54.3
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.7e-29 133.3 125 53.6
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 6.5e-29 131.3 122 52.5
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 8.5e-29 131.0 125 52.8
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.1e-28 130.6 123 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.0e-26 124.0 120 50.0
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 6.7e-26 121.3 102 62.7
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.5e-20 102.8 81 66.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.5e-20 101.7 102 53.9
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.0e-18 97.4 94 54.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.0e-18 97.4 94 54.3
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.6e-17 92.8 63 69.8
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.8e-15 86.7 96 51.0
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 3.6e-11 72.4 70 58.6
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-10 70.9 83 51.8
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-10 70.9 83 51.8
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.4e-10 70.5 52 61.5
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.1e-07 60.8 45 60.0


User provided reference genes

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