Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 9.7e-283 976.1 472 100.0
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 9.7e-283 976.1 472 100.0
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 1.4e-281 972.2 472 99.6
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 5.0e-271 937.2 458 98.5
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 9.7e-267 922.9 452 98.2
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 5.3e-257 890.6 432 98.1
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 2.0e-240 835.5 421 94.5
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 5.6e-238 827.4 432 91.2
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.6e-237 824.7 432 90.5
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 8.3e-234 813.5 421 92.4
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.2e-232 809.7 433 88.0
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 3.5e-232 808.1 430 88.8
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 7.5e-227 790.4 421 88.6
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 9.6e-198 693.7 466 71.2
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 5.0e-170 601.7 436 64.9
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 1.1e-166 590.5 457 61.9
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.1e-166 590.5 426 65.5
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.5e-166 590.1 425 65.2
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 3.3e-166 589.0 426 64.8
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 2.2e-165 586.3 424 64.2
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 6.3e-165 584.7 427 64.4
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 1.1e-164 583.9 426 64.3
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 4.1e-164 582.0 432 63.9
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.7e-162 576.6 426 63.6
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.7e-162 576.6 426 63.6
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 2.5e-161 572.8 424 63.7
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 1.2e-160 570.5 424 63.2
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 4.7e-160 568.5 436 62.8
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 3.9e-159 565.5 431 62.2
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 5.1e-159 565.1 427 62.1
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 5.1e-159 565.1 423 63.4
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.5e-158 563.5 419 63.0
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 3.3e-158 562.4 422 62.8
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 5.7e-158 561.6 418 63.2
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 7.4e-158 561.2 424 61.6
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 9.7e-158 560.8 441 61.5
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 2.2e-157 559.7 423 62.9
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 3.7e-157 558.9 422 62.6
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 3.7e-157 558.9 441 61.2
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 1.1e-156 557.4 432 60.2
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.4e-156 557.0 413 63.7
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 1.8e-156 556.6 414 62.8
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 2.4e-156 556.2 490 55.9
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 2.4e-156 556.2 422 63.0
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 5.3e-156 555.1 427 62.8
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 7.7e-155 551.2 424 63.2
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 7.7e-155 551.2 429 61.8
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 1.0e-154 550.8 442 58.8
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 1.7e-154 550.1 420 60.7
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 8.5e-154 547.7 482 55.6
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 1.4e-153 547.0 428 60.0
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 7.2e-153 544.7 419 61.6
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 9.4e-153 544.3 435 60.2
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 9.4e-153 544.3 432 61.1
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 6.7e-151 538.1 437 58.6
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 2.0e-150 536.6 425 59.3
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.8e-149 532.7 454 58.1
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.8e-149 532.7 422 60.2
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 3.7e-149 532.3 433 60.3
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 3.1e-148 529.3 423 60.5
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.1e-148 529.3 421 59.9
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.3e-148 528.5 422 59.7
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 9.1e-148 527.7 465 55.3
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 3.5e-147 525.8 424 59.7
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 1.7e-146 523.5 433 58.9
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 4.2e-145 518.8 415 60.5
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 4.7e-144 515.4 407 59.7
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 1.4e-140 503.8 372 63.2
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 5.0e-138 495.4 444 55.0
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 6.5e-138 495.0 425 56.2
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 3.2e-137 492.7 432 56.0
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 9.4e-137 491.1 427 58.1
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 1.1e-132 477.6 425 54.4
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 9.1e-132 474.6 429 54.3
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 9.5e-129 464.5 425 54.8
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 3.0e-127 459.5 456 53.5
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.2e-126 457.6 427 54.3
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 6.3e-125 451.8 393 54.5
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 7.0e-124 448.4 349 60.7
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.1e-121 441.0 427 52.5
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.2e-118 431.0 347 62.0
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.5e-118 430.6 407 51.4
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 7.5e-118 428.3 423 50.1
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 7.5e-118 428.3 423 50.1
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 9.8e-118 427.9 345 58.0
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.6e-115 420.6 332 60.8
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.7e-114 417.2 436 45.9
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 3.1e-103 379.8 466 40.1
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 1.1e-100 371.3 417 42.9
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 4.6e-99 365.9 427 41.5
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 1.6e-96 357.5 485 39.2
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 6.6e-82 308.9 212 66.5
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 6.2e-80 302.4 403 38.7
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 3.4e-78 296.6 252 57.5
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 6.4e-77 292.4 209 64.6
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 2.5e-68 263.8 180 68.3
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.5e-62 244.6 187 59.4
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.9e-58 229.9 187 55.1
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 8.5e-53 212.2 186 55.9
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 2.5e-49 200.7 153 58.2
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 2.6e-41 174.1 145 58.6
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 7.4e-41 172.6 157 52.9
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 7.4e-41 172.6 145 58.6
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 9.7e-41 172.2 148 50.0
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-40 171.8 145 58.6
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 2.2e-40 171.0 168 53.6
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 3.8e-37 160.2 128 56.2
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 8.5e-37 159.1 99 73.7
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 2.5e-36 157.5 124 62.9
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.7e-35 154.1 125 55.2
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.6e-33 147.5 107 62.6
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 4.4e-33 146.7 116 58.6
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.7e-32 144.8 116 58.6
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 7.7e-30 136.0 109 59.6
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 8.5e-29 132.5 83 71.1
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 8.3e-24 115.9 113 55.8
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.8e-23 114.8 88 59.1
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 2.4e-23 114.4 123 48.0
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.4e-23 114.4 109 47.7
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 7.0e-23 112.8 116 53.4
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 2.0e-22 111.3 81 58.0
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.0e-22 111.3 88 58.0
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 5.0e-21 106.7 69 69.6
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 8.5e-21 105.9 81 56.8
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 4.2e-20 103.6 59 74.6
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 1.6e-19 101.7 102 53.9
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 8.0e-19 99.4 102 52.9
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 9.1e-15 85.9 63 61.9
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.2e-14 85.5 58 65.5
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 4.5e-14 83.6 128 33.6
BolC1t03288H Brassica oleracea HOM05D032251 ORTHO05D042368 1.3e-13 82.0 106 47.2
C03p78480 Brassica napus HOM05D032251 ORTHO05D097000 1.7e-13 81.6 99 48.5
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 3.8e-13 80.5 48 72.9
C05p21110 Brassica napus HOM05D032251 ORTHO05D042368 6.6e-13 79.7 106 46.2
C05p13980 Brassica napus HOM05D000840 ORTHO05D000670 1.0e-10 72.4 47 80.9
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 1.0e-10 72.4 58 56.9
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 1.4e-07 62.0 42 64.3
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 7.0e-07 59.7 42 64.3
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 3.5e-06 57.4 42 61.9


User provided reference genes

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