Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p10030 Brassica napus HOM05D006955 ORTHO05D008701 2.1e-21 104.8 51 100.0
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 9.6e-11 69.3 35 94.3
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 9.6e-11 69.3 35 94.3
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 9.6e-11 69.3 35 94.3
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 9.6e-11 69.3 35 94.3
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 9.6e-11 69.3 35 94.3
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 9.6e-11 69.3 35 94.3
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 6.2e-10 66.6 35 91.4
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 8.1e-10 66.2 35 91.4
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 1.1e-09 65.9 35 88.6
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 3.1e-09 64.3 35 85.7
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 9.0e-09 62.8 35 80.0
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 1.2e-08 62.4 33 84.8
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 1.5e-08 62.0 35 80.0
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 1.5e-08 62.0 35 80.0
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 2.0e-08 61.6 35 77.1
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 2.0e-08 61.6 35 77.1
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 4.4e-08 60.5 33 81.8
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 4.4e-08 60.5 35 77.1
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 4.4e-08 60.5 35 74.3
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 7.6e-08 59.7 33 81.8
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 7.6e-08 59.7 35 74.3
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 9.9e-08 59.3 35 74.3
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 9.9e-08 59.3 35 74.3
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 1.3e-07 58.9 35 71.4
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 1.3e-07 58.9 35 71.4
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 1.3e-07 58.9 35 80.0
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 1.7e-07 58.5 35 77.1
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 2.2e-07 58.2 35 77.1
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 2.9e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 3.8e-07 57.4 31 80.6
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 3.8e-07 57.4 35 74.3
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 3.8e-07 57.4 35 71.4
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 3.8e-07 57.4 35 71.4
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 3.8e-07 57.4 35 68.6
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 4.9e-07 57.0 35 71.4
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 6.4e-07 56.6 33 75.8
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 6.4e-07 56.6 35 68.6
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 6.4e-07 56.6 35 77.1
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 8.4e-07 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 8.4e-07 56.2 31 77.4
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 8.4e-07 56.2 35 74.3
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 8.4e-07 56.2 35 74.3
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 8.4e-07 56.2 35 68.6
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 1.4e-06 55.5 35 71.4
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 1.4e-06 55.5 35 71.4
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 1.4e-06 55.5 35 68.6
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 1.4e-06 55.5 35 68.6
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 1.9e-06 55.1 35 68.6
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 1.9e-06 55.1 35 68.6
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 1.9e-06 55.1 35 65.7
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 2.4e-06 54.7 32 75.0
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 2.4e-06 54.7 35 71.4
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 2.4e-06 54.7 35 71.4
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 2.4e-06 54.7 35 68.6
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 3.2e-06 54.3 32 71.9
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 4.2e-06 53.9 35 62.9
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 4.2e-06 53.9 35 62.9
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 4.2e-06 53.9 33 69.7
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 5.4e-06 53.5 35 68.6
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 5.4e-06 53.5 35 68.6
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 7.1e-06 53.1 35 68.6
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 7.1e-06 53.1 33 69.7
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 7.1e-06 53.1 33 72.7
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 9.3e-06 52.8 36 72.2


User provided reference genes

Program Settings