Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.4e-290 1002.3 532 100.0
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.3e-288 995.0 532 98.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.4e-269 931.8 533 93.2
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 5.3e-269 930.6 536 94.0
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.1e-263 912.9 535 91.2
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.6e-257 892.5 538 87.0
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 3.9e-256 887.9 536 86.4
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 2.4e-253 878.6 540 85.2
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 4.0e-253 877.9 539 86.8
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.2e-249 866.3 539 84.4
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 2.3e-248 862.1 531 87.9
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.6e-246 855.9 531 84.6
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 6.9e-245 850.5 532 83.8
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.9e-242 842.4 531 85.5
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.2e-241 839.7 535 85.0
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-238 829.7 428 98.1
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 4.8e-230 801.2 562 76.5
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.1e-221 771.9 528 76.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.3e-219 766.5 522 76.6
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 8.0e-209 730.7 534 72.7
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 4.4e-207 724.9 538 71.6
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.1e-205 720.3 536 71.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 7.0e-205 717.6 507 72.6
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 3.8e-203 711.8 539 70.5
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 3.8e-203 711.8 538 70.6
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 8.5e-203 710.7 531 71.2
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.5e-203 710.7 428 82.9
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.5e-202 709.9 534 70.0
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.9e-202 709.5 538 70.8
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 2.5e-202 709.1 535 70.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 2.5e-202 709.1 428 82.5
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.2e-202 708.4 428 82.7
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 5.5e-202 708.0 427 81.7
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 7.2e-202 707.6 525 71.4
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.2e-201 706.8 509 73.1
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.6e-201 706.4 518 73.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.1e-201 706.1 457 78.1
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.6e-201 705.3 532 70.9
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.7e-201 704.9 428 82.5
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.0e-200 703.7 541 69.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.0e-200 703.7 428 82.0
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.0e-200 703.7 444 78.8
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.4e-200 703.4 547 69.1
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.3e-200 702.6 532 70.9
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 4.0e-200 701.8 426 81.7
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 6.8e-200 701.0 531 70.6
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.5e-199 699.9 426 80.8
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.5e-199 699.9 539 69.0
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.0e-199 699.5 541 69.1
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.0e-199 699.5 487 74.1
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.0e-199 699.5 533 69.6
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 2.6e-199 699.1 523 71.1
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 3.4e-199 698.7 428 81.3
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 4.4e-199 698.4 422 81.5
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 5.7e-199 698.0 534 69.5
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.7e-199 698.0 521 73.5
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 5.7e-199 698.0 535 69.5
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.8e-199 697.2 422 81.8
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.7e-198 696.4 526 70.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.7e-198 695.3 528 72.0
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 6.3e-198 694.5 428 81.1
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-197 693.7 517 71.6
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.1e-197 693.7 424 81.1
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.8e-197 693.0 422 81.0
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.8e-197 693.0 532 69.0
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 2.4e-197 692.6 422 81.0
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 3.1e-197 692.2 424 81.1
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.1e-197 692.2 422 81.3
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 4.1e-197 691.8 422 80.8
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 5.4e-197 691.4 426 79.8
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.4e-197 691.4 559 66.7
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.2e-196 690.3 421 80.5
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.2e-196 690.3 527 71.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.0e-196 689.5 418 81.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.0e-196 689.5 426 79.3
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 4.5e-196 688.3 422 81.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 7.7e-196 687.6 422 80.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.0e-195 687.2 426 79.8
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.0e-195 687.2 422 80.6
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.3e-195 686.8 426 79.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.7e-195 686.4 537 70.2
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.7e-195 686.4 537 70.2
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.3e-195 686.0 534 71.9
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.3e-195 686.0 530 71.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.3e-195 686.0 422 81.0
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 5.0e-195 684.9 531 69.3
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.9e-194 682.9 428 79.0
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.2e-194 681.8 488 72.3
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 5.5e-194 681.4 426 78.9
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-193 680.2 426 78.2
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.3e-192 676.0 445 76.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.8e-192 674.5 523 69.4
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.5e-191 673.3 426 78.2
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.5e-191 673.3 473 72.5
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-191 672.2 422 79.4
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.7e-190 669.8 424 76.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 2.8e-190 669.1 424 77.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.8e-190 669.1 420 78.1
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 4.9e-190 668.3 424 77.1
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 6.3e-190 667.9 424 76.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.8e-189 666.4 422 77.7
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.2e-188 663.7 449 73.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.6e-185 653.3 431 75.9
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.1e-185 652.9 408 85.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.1e-185 652.9 423 74.9
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.1e-184 649.0 418 75.6
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 4.4e-183 645.2 418 75.1
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.3e-182 643.7 396 81.6
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 4.6e-180 635.2 434 73.5
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.0e-179 634.0 434 73.5
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.0e-179 631.7 488 68.6
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.4e-176 623.6 419 72.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.2e-176 621.7 437 73.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-175 620.5 422 72.0
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.0e-175 619.8 424 70.8
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 6.4e-174 614.8 464 68.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.6e-169 600.1 391 76.2
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 7.6e-167 591.3 523 60.2
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.7e-163 580.1 366 77.3
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 4.3e-162 575.5 418 67.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.0e-155 552.7 328 83.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.9e-142 509.6 418 62.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 7.9e-140 501.5 328 76.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.3e-138 496.1 395 68.9
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 4.8e-137 492.3 422 60.7
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-135 487.6 290 83.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.6e-135 486.5 420 58.8
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 3.9e-131 472.6 290 79.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.6e-127 459.9 289 80.6
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.5e-122 444.1 277 78.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 4.8e-121 439.1 426 56.1
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.4e-117 424.9 289 74.7
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.2e-109 399.4 247 81.4
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-103 381.3 421 48.0
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.2e-97 360.5 242 75.6
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.7e-90 335.9 424 44.1
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.9e-75 285.4 173 78.6
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-67 261.2 343 42.9
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.6e-52 211.5 186 63.4
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.0e-51 206.8 135 73.3
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.9e-48 198.0 197 58.9
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.0e-46 192.2 182 54.4
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 8.6e-46 189.1 161 67.7
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.1e-44 184.5 197 56.9
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-43 182.2 195 56.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 3.1e-43 180.6 175 61.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 6.9e-43 179.5 174 59.8
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 5.4e-40 169.9 120 68.3
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-38 165.2 197 53.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.3e-38 164.5 129 64.3
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.6e-37 159.1 102 75.5
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.1e-36 157.9 112 70.5
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-33 147.5 90 81.1
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 4.2e-32 143.7 94 69.1
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 7.1e-32 142.9 160 54.4
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 7.1e-32 142.9 160 54.4
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-27 129.0 185 47.6
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 3.9e-22 110.5 78 66.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 6.7e-22 109.8 259 31.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.4e-16 92.0 82 63.4
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.6e-15 88.6 57 73.7
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 6.7e-06 56.6 28 96.4


User provided reference genes

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