Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 2020.7 947 100.0
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 2020.7 947 100.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1956.4 947 96.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1884.4 947 95.1
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1877.4 948 93.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1862.0 944 94.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1859.3 947 91.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1810.0 952 89.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1803.1 947 88.6
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1794.2 947 88.5
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1793.5 947 88.1
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1773.1 948 87.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1772.3 948 87.9
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1772.3 947 88.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1764.2 948 87.7
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1759.6 948 87.6
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1733.4 954 84.6
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1709.9 820 97.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1671.4 945 84.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1626.7 960 80.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1475.7 980 71.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1475.3 977 71.6
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 980 70.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1473.0 993 70.8
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1471.4 979 70.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 980 70.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 980 71.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1468.8 982 70.2
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 976 71.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 978 71.8
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 980 70.8
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1462.6 981 72.0
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 982 70.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1461.4 979 70.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1461.0 961 71.2
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1458.7 980 70.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1458.4 980 70.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1458.0 976 70.8
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1456.4 968 70.8
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1456.4 975 70.2
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1450.6 979 70.3
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 983 70.0
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 979 70.0
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 980 69.8
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1445.6 970 70.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1445.6 960 70.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 976 69.7
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 967 70.1
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1440.6 968 71.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1440.6 965 69.9
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1439.1 982 70.1
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1439.1 972 70.1
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 971 69.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 974 70.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 969 70.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 958 69.7
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 981 68.8
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 959 70.5
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1434.1 978 69.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1434.1 964 70.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 980 69.7
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 968 70.0
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1431.0 981 69.2
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 964 70.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 972 69.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 971 69.9
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 954 70.2
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 980 69.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1428.3 965 70.5
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1426.4 974 69.8
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 971 68.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 969 69.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1424.8 966 70.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1423.7 975 68.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1423.7 954 70.3
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1423.3 965 70.7
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 978 68.1
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1422.1 978 68.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 966 70.1
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 969 68.7
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1420.6 978 68.8
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1419.8 960 69.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1419.8 950 70.6
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1418.3 970 68.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1416.0 964 68.5
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 956 69.7
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 967 68.9
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 973 68.2
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 974 68.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 980 68.3
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1414.1 982 68.5
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1412.5 971 69.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 984 68.3
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1410.2 964 69.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1409.4 975 69.1
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1407.9 965 68.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 960 69.5
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1403.7 976 68.1
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 983 69.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1401.0 971 68.6
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1398.3 953 69.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1397.1 966 68.6
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1393.3 971 68.5
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1391.7 980 67.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1389.0 967 68.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1384.4 972 68.0
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1374.4 923 70.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1370.9 981 66.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1364.7 931 68.7
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1360.9 976 66.5
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1358.2 978 67.0
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1351.7 948 66.9
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1347.4 979 66.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1347.4 993 65.1
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1334.7 963 67.0
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1327.8 998 65.2
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1311.6 869 70.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1307.4 879 69.9
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1297.7 1008 62.9
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1288.9 968 63.0
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1283.1 850 71.4
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1275.8 763 75.5
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1275.4 847 70.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1144.4 779 68.9
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1138.6 769 69.4
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1134.8 768 70.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1125.9 780 67.3
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 8.4e-310 1067.0 950 55.2
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.7e-302 1042.7 934 55.5
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.2e-292 1010.0 937 54.2
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.1e-290 1003.4 675 70.4
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.5e-276 955.3 946 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.7e-273 945.3 943 51.2
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-264 916.8 687 64.3
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.8e-243 846.7 843 51.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.9e-223 778.5 562 67.3
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.7e-188 662.5 404 75.0
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 6.7e-126 456.1 285 74.4
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 7.5e-109 399.4 343 57.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 7.5e-93 346.3 217 75.1
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 8.3e-92 342.8 415 46.5
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.5e-88 331.3 365 50.7
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.7e-84 317.4 202 68.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.1e-80 305.8 194 76.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 8.9e-78 296.2 275 54.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.5e-69 268.9 160 78.1
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.6e-66 258.8 670 29.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-65 255.0 215 58.1
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.6e-64 249.6 160 70.0
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 3.5e-58 231.1 144 73.6
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 8.7e-49 199.9 360 37.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.5e-43 181.8 928 23.2
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.8e-38 165.6 96 77.1
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.9e-36 158.3 149 56.4
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.2e-31 142.1 137 51.8
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.8e-31 141.0 93 74.2
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 3.1e-30 138.3 91 65.9
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.2e-27 127.9 86 68.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-25 120.9 183 37.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-21 109.4 128 47.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.7e-21 107.1 168 39.9
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 8.5e-20 103.6 183 33.9
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.1e-19 103.2 408 26.5
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.1e-18 99.0 121 43.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.4e-17 96.3 98 52.0
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-13 83.2 115 44.3
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.4e-09 69.7 57 54.4
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 6.8e-09 67.4 48 70.8
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 7.5e-08 63.9 69 43.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.3e-07 63.2 75 46.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.2e-07 62.4 29 86.2
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.7e-07 61.6 45 66.7


User provided reference genes

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