Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 3.8e-266 921.0 491 100.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.9e-265 918.7 491 99.6
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.4e-260 901.7 487 94.0
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 7.3e-257 890.2 492 92.5
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 2.9e-245 851.7 453 96.2
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.7e-237 825.9 455 90.3
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 2.9e-229 798.5 455 88.4
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 3.1e-223 778.5 455 86.6
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 6.4e-221 770.8 463 84.9
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.1e-217 760.0 458 84.9
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 9.6e-217 756.9 457 85.1
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 9.6e-209 730.3 459 80.0
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 1.1e-199 700.3 456 76.8
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 6.5e-181 637.9 388 78.4
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 4.2e-180 635.2 389 78.1
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 5.5e-180 634.8 427 74.5
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 2.1e-179 632.9 409 76.8
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 2.7e-179 632.5 398 77.1
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.4e-178 630.2 409 77.3
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.8e-178 629.8 382 78.3
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 2.3e-178 629.4 392 77.3
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.1e-177 627.1 424 72.9
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.5e-177 626.7 423 74.0
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 7.4e-177 624.4 391 76.7
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.3e-176 623.6 379 79.2
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.7e-176 623.2 404 75.7
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 2.2e-176 622.9 415 72.0
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 6.3e-176 621.3 405 75.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 6.3e-176 621.3 405 75.6
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 9.1e-175 617.5 444 68.5
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.5e-174 616.7 367 80.4
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.5e-174 615.5 392 73.5
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.5e-174 615.5 392 73.5
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 5.9e-174 614.8 411 73.2
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 7.7e-174 614.4 414 71.7
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 2.9e-173 612.5 392 73.5
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.1e-172 610.5 368 77.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.9e-172 609.8 377 79.3
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 1.9e-172 609.8 377 77.2
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.2e-172 609.0 457 68.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 4.2e-172 608.6 377 75.6
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 9.4e-172 607.4 377 76.9
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 2.7e-171 605.9 398 73.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 8.0e-171 604.4 376 78.5
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.4e-170 603.6 378 76.5
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.8e-170 603.2 369 78.6
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.3e-170 602.8 387 76.2
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.9e-170 602.1 400 71.5
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 5.2e-170 601.7 432 70.6
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 5.2e-170 601.7 363 78.8
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 8.8e-170 600.9 433 70.2
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 2.0e-169 599.7 400 71.0
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 3.3e-169 599.0 389 73.3
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 9.7e-169 597.4 368 77.2
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 9.7e-169 597.4 379 73.6
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.7e-168 596.7 400 70.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 3.7e-168 595.5 368 76.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.8e-167 593.2 369 78.0
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 4.1e-167 592.0 376 75.3
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 7.0e-167 591.3 363 80.7
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.6e-166 589.3 364 77.5
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.5e-166 589.0 369 77.2
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 5.9e-166 588.2 389 72.5
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 7.7e-166 587.8 363 76.6
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 7.7e-166 587.8 364 77.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.3e-165 587.0 406 72.4
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 1.7e-165 586.6 392 72.4
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.8e-165 585.5 364 77.2
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.1e-164 583.9 405 71.9
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 2.5e-164 582.8 364 78.0
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 3.2e-164 582.4 389 75.1
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 4.2e-164 582.0 408 70.8
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 7.2e-164 581.3 369 76.7
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 2.1e-163 579.7 369 76.4
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.7e-163 579.3 369 74.5
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.7e-163 579.3 369 75.3
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 4.7e-163 578.6 378 75.4
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 4.0e-162 575.5 379 74.4
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 6.8e-162 574.7 391 71.4
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 2.8e-160 569.3 372 74.7
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 2.4e-159 566.2 400 72.0
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.7e-158 562.8 378 72.0
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 3.5e-158 562.4 357 76.2
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 4.5e-158 562.0 369 74.8
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 2.1e-155 553.1 368 73.6
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.3e-154 549.7 426 65.7
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 4.0e-154 548.9 369 75.9
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.7e-152 543.5 363 70.5
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.2e-150 537.3 368 73.4
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.2e-147 527.3 315 77.1
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.3e-146 523.1 395 67.1
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 3.0e-146 522.7 314 76.8
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 3.0e-146 522.7 458 58.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.2e-144 516.5 363 72.2
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 8.3e-144 514.6 363 71.9
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.4e-143 513.8 401 65.3
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.2e-143 512.7 388 66.8
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 5.9e-142 508.4 352 68.8
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.4e-138 497.3 286 80.4
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 4.0e-138 495.7 370 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.6e-131 473.8 399 60.9
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.6e-126 455.7 339 63.1
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 7.3e-124 448.4 410 55.6
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 3.7e-120 436.0 357 57.7
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.2e-111 406.4 244 76.6
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 8.7e-109 398.3 280 62.9
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 4.6e-102 375.9 244 70.9
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 5.8e-97 359.0 271 64.2
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 2.7e-94 350.1 364 53.8
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 9.6e-92 341.7 237 69.2
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 5.5e-79 299.3 231 61.5
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.0e-69 266.9 287 45.3
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 6.7e-69 265.8 337 42.7
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-67 261.2 204 54.9
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-67 261.2 204 54.9
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-66 257.3 204 54.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.1e-66 256.5 204 53.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.0e-52 211.1 210 51.9
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 3.8e-40 170.2 141 67.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-31 142.1 98 59.2
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 6.0e-17 93.2 93 58.1
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 5.2e-13 80.1 93 53.8
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.3e-11 75.5 271 23.6
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.9e-11 74.3 278 22.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 4.9e-11 73.6 272 22.1
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.4e-10 70.1 272 20.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 9.2e-10 69.3 282 22.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.6e-09 68.6 275 21.5
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.6e-09 68.6 269 21.2
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.1e-07 62.4 132 23.5
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.3e-07 60.8 267 20.6
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 3.3e-07 60.8 61 50.8


User provided reference genes

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